Variant report
Variant | rs28594607 |
---|---|
Chromosome Location | chr8:42532295-42532296 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10101564 | 0.90[AMR][1000 genomes] |
rs10101973 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10104038 | 0.90[AMR][1000 genomes] |
rs10112455 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13439675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1451241 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1451242 | 0.81[AMR][1000 genomes] |
rs16891521 | 0.90[AMR][1000 genomes] |
rs16891530 | 0.90[AMR][1000 genomes] |
rs28413944 | 0.90[AMR][1000 genomes] |
rs28528998 | 0.90[AMR][1000 genomes] |
rs28616109 | 0.90[AMR][1000 genomes] |
rs28621985 | 0.90[AMR][1000 genomes] |
rs28680472 | 0.90[AMR][1000 genomes] |
rs28809511 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs28848209 | 0.90[AMR][1000 genomes] |
rs28849085 | 0.90[AMR][1000 genomes] |
rs28850974 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4952 | 0.90[AMR][1000 genomes] |
rs4953 | 0.90[AMR][1000 genomes] |
rs59705185 | 0.81[AMR][1000 genomes] |
rs62515867 | 0.90[AMR][1000 genomes] |
rs62516708 | 0.90[AMR][1000 genomes] |
rs62516711 | 0.90[AMR][1000 genomes] |
rs62516713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516715 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516718 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516719 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516738 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516739 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516740 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516741 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516742 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516743 | 0.90[AMR][1000 genomes] |
rs62516744 | 0.82[EUR][1000 genomes] |
rs62516745 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs62516746 | 0.90[AMR][1000 genomes] |
rs62516747 | 0.82[EUR][1000 genomes] |
rs62516748 | 0.82[EUR][1000 genomes] |
rs62516749 | 0.82[EUR][1000 genomes] |
rs62516750 | 0.82[EUR][1000 genomes] |
rs62516751 | 0.82[EUR][1000 genomes] |
rs62516752 | 0.82[EUR][1000 genomes] |
rs62516753 | 0.82[EUR][1000 genomes] |
rs62516754 | 0.82[EUR][1000 genomes] |
rs62516755 | 0.82[EUR][1000 genomes] |
rs62516756 | 0.82[EUR][1000 genomes] |
rs62516757 | 0.82[EUR][1000 genomes] |
rs62516758 | 0.82[EUR][1000 genomes] |
rs62516759 | 0.82[EUR][1000 genomes] |
rs62518160 | 0.82[EUR][1000 genomes] |
rs62518180 | 0.82[EUR][1000 genomes] |
rs62518181 | 0.82[EUR][1000 genomes] |
rs62518182 | 0.82[EUR][1000 genomes] |
rs62518183 | 0.82[EUR][1000 genomes] |
rs62518185 | 0.82[EUR][1000 genomes] |
rs62518186 | 0.82[EUR][1000 genomes] |
rs62518187 | 0.82[EUR][1000 genomes] |
rs62518188 | 0.82[EUR][1000 genomes] |
rs62518189 | 0.82[EUR][1000 genomes] |
rs62518190 | 0.82[EUR][1000 genomes] |
rs62518193 | 0.90[AMR][1000 genomes] |
rs62518196 | 0.90[AMR][1000 genomes] |
rs62518205 | 0.90[AMR][1000 genomes] |
rs62518213 | 0.90[AMR][1000 genomes] |
rs62518216 | 0.90[AMR][1000 genomes] |
rs7015920 | 0.90[AMR][1000 genomes] |
rs7823429 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7824783 | 0.90[AMR][1000 genomes] |
rs7839973 | 0.90[AMR][1000 genomes] |
rs7844824 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs9298625 | 0.90[AMR][1000 genomes] |
rs9298626 | 0.90[AMR][1000 genomes] |
rs9298627 | 0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530880 | chr8:41895241-42755506 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
2 | nsv1034724 | chr8:42386707-42772203 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:42522200-42533400 | Weak transcription | Dnd41 | blood |