Variant report

Variant	rs59705185
Chromosome Location	chr8:42526891-42526892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:42395559..42397564-chr8:42526201..42528579,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176209	Chromatin interaction
ENSG00000168575	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10101564	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10101973	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10104038	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10112455	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13439675	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1451241	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1451242	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891521	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891530	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28413944	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28528998	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28594607	0.81[AMR][1000 genomes]
rs28616109	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28621985	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28680472	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28809511	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28848209	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28849085	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28850974	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4952	0.87[EUR][1000 genomes]
rs4953	0.87[EUR][1000 genomes]
rs55817013	0.87[EUR][1000 genomes]
rs57435730	0.87[EUR][1000 genomes]
rs57499403	0.87[EUR][1000 genomes]
rs57521649	0.87[EUR][1000 genomes]
rs58205452	0.87[EUR][1000 genomes]
rs58279443	0.87[EUR][1000 genomes]
rs59521406	0.87[EUR][1000 genomes]
rs59569717	0.87[EUR][1000 genomes]
rs60926557	0.87[EUR][1000 genomes]
rs61601101	0.81[EUR][1000 genomes]
rs62515862	0.87[EUR][1000 genomes]
rs62515865	0.87[EUR][1000 genomes]
rs62515867	0.87[EUR][1000 genomes]
rs62516708	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516710	0.84[EUR][1000 genomes]
rs62516711	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516713	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516715	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516718	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516719	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516738	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516739	0.93[EUR][1000 genomes]
rs62516740	0.93[EUR][1000 genomes]
rs62516741	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516742	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516743	0.90[EUR][1000 genomes]
rs62516744	0.93[EUR][1000 genomes]
rs62516745	0.93[EUR][1000 genomes]
rs62516746	0.90[EUR][1000 genomes]
rs62516747	0.93[EUR][1000 genomes]
rs62516748	0.93[EUR][1000 genomes]
rs62516749	0.93[EUR][1000 genomes]
rs62516750	0.93[EUR][1000 genomes]
rs62516751	0.93[EUR][1000 genomes]
rs62516752	0.93[EUR][1000 genomes]
rs62516753	0.93[EUR][1000 genomes]
rs62516754	0.93[EUR][1000 genomes]
rs62516755	0.93[EUR][1000 genomes]
rs62516756	0.93[EUR][1000 genomes]
rs62516757	0.93[EUR][1000 genomes]
rs62516758	0.93[EUR][1000 genomes]
rs62516759	0.93[EUR][1000 genomes]
rs62518160	0.93[EUR][1000 genomes]
rs62518180	0.93[EUR][1000 genomes]
rs62518181	0.93[EUR][1000 genomes]
rs62518182	0.93[EUR][1000 genomes]
rs62518183	0.93[EUR][1000 genomes]
rs62518184	0.87[EUR][1000 genomes]
rs62518185	0.93[EUR][1000 genomes]
rs62518186	0.93[EUR][1000 genomes]
rs62518187	0.93[EUR][1000 genomes]
rs62518188	0.93[EUR][1000 genomes]
rs62518189	0.93[EUR][1000 genomes]
rs62518190	0.93[EUR][1000 genomes]
rs62518191	0.87[EUR][1000 genomes]
rs62518192	0.87[EUR][1000 genomes]
rs62518193	0.87[EUR][1000 genomes]
rs62518194	0.87[EUR][1000 genomes]
rs62518195	0.87[EUR][1000 genomes]
rs62518196	0.87[EUR][1000 genomes]
rs62518197	0.83[EUR][1000 genomes]
rs62518198	0.83[EUR][1000 genomes]
rs62518199	0.83[EUR][1000 genomes]
rs62518200	0.87[EUR][1000 genomes]
rs62518201	0.87[EUR][1000 genomes]
rs62518202	0.87[EUR][1000 genomes]
rs62518203	0.87[EUR][1000 genomes]
rs62518204	0.87[EUR][1000 genomes]
rs62518205	0.87[EUR][1000 genomes]
rs62518206	0.87[EUR][1000 genomes]
rs62518207	0.87[EUR][1000 genomes]
rs62518208	0.87[EUR][1000 genomes]
rs62518209	0.87[EUR][1000 genomes]
rs62518210	0.87[EUR][1000 genomes]
rs62518211	0.87[EUR][1000 genomes]
rs62518212	0.87[EUR][1000 genomes]
rs62518213	0.87[EUR][1000 genomes]
rs62518215	0.87[EUR][1000 genomes]
rs62518216	0.87[EUR][1000 genomes]
rs62518217	0.87[EUR][1000 genomes]
rs62518218	0.87[EUR][1000 genomes]
rs62518219	0.80[EUR][1000 genomes]
rs62518226	0.87[EUR][1000 genomes]
rs62518227	0.87[EUR][1000 genomes]
rs62518228	0.87[EUR][1000 genomes]
rs62518229	0.87[EUR][1000 genomes]
rs6997994	0.87[EUR][1000 genomes]
rs7002613	0.87[EUR][1000 genomes]
rs7002873	0.87[EUR][1000 genomes]
rs7008048	0.87[EUR][1000 genomes]
rs7008076	0.87[EUR][1000 genomes]
rs7015920	0.87[EUR][1000 genomes]
rs7815274	0.87[EUR][1000 genomes]
rs7818409	0.87[EUR][1000 genomes]
rs7818711	0.84[EUR][1000 genomes]
rs7823429	0.93[EUR][1000 genomes]
rs7824783	0.87[EUR][1000 genomes]
rs7832104	0.87[EUR][1000 genomes]
rs7838246	0.87[EUR][1000 genomes]
rs7839973	0.80[EUR][1000 genomes]
rs7844824	0.93[EUR][1000 genomes]
rs9298625	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9298626	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9298627	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42522200-42533400	Weak transcription	Dnd41	blood
2	chr8:42526800-42527200	Enhancers	Primary neutrophils fromperipheralblood	blood

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