Variant report

Variant	rs4952
Chromosome Location	chr8:42587065-42587066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10101564	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10101973	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10104038	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10112455	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13439675	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1451241	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1451242	0.90[EUR][1000 genomes]
rs16891521	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891530	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28413944	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28528998	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28594607	0.90[AMR][1000 genomes]
rs28616109	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28621985	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28680472	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28809511	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28848209	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28849085	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28850974	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4305884	1.00[MEX][hapmap]
rs4458859	1.00[MEX][hapmap]
rs4953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55817013	1.00[EUR][1000 genomes]
rs57435730	1.00[EUR][1000 genomes]
rs57499403	1.00[EUR][1000 genomes]
rs57521649	1.00[EUR][1000 genomes]
rs58205452	1.00[EUR][1000 genomes]
rs58279443	1.00[EUR][1000 genomes]
rs59521406	1.00[EUR][1000 genomes]
rs59569717	1.00[EUR][1000 genomes]
rs59689170	0.90[EUR][1000 genomes]
rs59705185	0.87[EUR][1000 genomes]
rs60926557	1.00[EUR][1000 genomes]
rs61601101	0.93[EUR][1000 genomes]
rs62515862	1.00[EUR][1000 genomes]
rs62515865	1.00[EUR][1000 genomes]
rs62515867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515871	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62515872	0.90[EUR][1000 genomes]
rs62515873	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516708	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516710	0.84[EUR][1000 genomes]
rs62516711	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516713	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516715	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516718	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516719	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516738	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516739	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516740	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516741	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516742	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516743	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516744	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516745	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62516747	0.93[EUR][1000 genomes]
rs62516748	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516749	0.93[EUR][1000 genomes]
rs62516750	0.93[EUR][1000 genomes]
rs62516751	0.93[EUR][1000 genomes]
rs62516752	0.93[EUR][1000 genomes]
rs62516753	0.93[EUR][1000 genomes]
rs62516754	0.93[EUR][1000 genomes]
rs62516755	0.93[EUR][1000 genomes]
rs62516756	0.93[EUR][1000 genomes]
rs62516757	0.93[EUR][1000 genomes]
rs62516758	0.93[EUR][1000 genomes]
rs62516759	0.93[EUR][1000 genomes]
rs62518160	0.93[EUR][1000 genomes]
rs62518180	0.93[EUR][1000 genomes]
rs62518181	0.93[EUR][1000 genomes]
rs62518182	0.93[EUR][1000 genomes]
rs62518183	0.93[EUR][1000 genomes]
rs62518184	0.86[EUR][1000 genomes]
rs62518185	0.93[EUR][1000 genomes]
rs62518186	0.93[EUR][1000 genomes]
rs62518187	0.93[EUR][1000 genomes]
rs62518188	0.93[EUR][1000 genomes]
rs62518189	0.93[EUR][1000 genomes]
rs62518190	0.93[EUR][1000 genomes]
rs62518191	1.00[EUR][1000 genomes]
rs62518192	1.00[EUR][1000 genomes]
rs62518193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518194	1.00[EUR][1000 genomes]
rs62518195	1.00[EUR][1000 genomes]
rs62518196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518197	0.96[EUR][1000 genomes]
rs62518198	0.96[EUR][1000 genomes]
rs62518199	0.96[EUR][1000 genomes]
rs62518200	1.00[EUR][1000 genomes]
rs62518201	1.00[EUR][1000 genomes]
rs62518202	1.00[EUR][1000 genomes]
rs62518203	1.00[EUR][1000 genomes]
rs62518204	1.00[EUR][1000 genomes]
rs62518205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518206	1.00[EUR][1000 genomes]
rs62518207	1.00[EUR][1000 genomes]
rs62518208	1.00[EUR][1000 genomes]
rs62518209	1.00[EUR][1000 genomes]
rs62518210	1.00[EUR][1000 genomes]
rs62518211	1.00[EUR][1000 genomes]
rs62518212	1.00[EUR][1000 genomes]
rs62518213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518215	1.00[EUR][1000 genomes]
rs62518216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518217	1.00[EUR][1000 genomes]
rs62518218	1.00[EUR][1000 genomes]
rs62518219	0.93[EUR][1000 genomes]
rs62518220	0.89[EUR][1000 genomes]
rs62518226	1.00[EUR][1000 genomes]
rs62518227	1.00[EUR][1000 genomes]
rs62518228	1.00[EUR][1000 genomes]
rs62518229	1.00[EUR][1000 genomes]
rs6987323	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6997994	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7000956	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7002613	1.00[EUR][1000 genomes]
rs7002873	1.00[EUR][1000 genomes]
rs7008048	1.00[EUR][1000 genomes]
rs7008076	1.00[EUR][1000 genomes]
rs7015920	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815274	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7818409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7818711	0.97[EUR][1000 genomes]
rs7823429	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7824160	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7824783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829867	1.00[MEX][hapmap]
rs7832104	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7838246	1.00[EUR][1000 genomes]
rs7839973	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7844824	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9298625	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9298626	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9298627	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1030451	chr8:42543326-42618390	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1034121	chr8:42549810-42618713	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42577800-42587400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:42578800-42587600	Weak transcription	Primary T cells from cord blood	blood
3	chr8:42585600-42588400	Weak transcription	HepG2	liver
4	chr8:42586000-42591800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:42586600-42589200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:42586800-42587200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:42586800-42587600	Enhancers	Pancreas	Pancrea

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