Variant report
Variant | rs7824783 |
---|---|
Chromosome Location | chr8:42586647-42586648 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10101564 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10101973 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10104038 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10112455 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs13439675 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1451241 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1451242 | 0.90[EUR][1000 genomes] |
rs16891521 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs16891530 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28413944 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28528998 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28594607 | 0.90[AMR][1000 genomes] |
rs28616109 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28621985 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28680472 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28809511 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs28848209 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28849085 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs28850974 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4953 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55817013 | 1.00[EUR][1000 genomes] |
rs57435730 | 1.00[EUR][1000 genomes] |
rs57499403 | 1.00[EUR][1000 genomes] |
rs57521649 | 1.00[EUR][1000 genomes] |
rs58205452 | 1.00[EUR][1000 genomes] |
rs58279443 | 1.00[EUR][1000 genomes] |
rs59521406 | 1.00[EUR][1000 genomes] |
rs59569717 | 1.00[EUR][1000 genomes] |
rs59689170 | 0.90[EUR][1000 genomes] |
rs59705185 | 0.87[EUR][1000 genomes] |
rs60926557 | 1.00[EUR][1000 genomes] |
rs61601101 | 0.93[EUR][1000 genomes] |
rs62515862 | 1.00[EUR][1000 genomes] |
rs62515865 | 1.00[EUR][1000 genomes] |
rs62515867 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62515871 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62515872 | 0.90[EUR][1000 genomes] |
rs62515873 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62516708 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62516710 | 0.84[EUR][1000 genomes] |
rs62516711 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62516713 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516715 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516718 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516719 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516738 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516739 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516740 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516741 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516742 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516743 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62516744 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516745 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62516747 | 0.93[EUR][1000 genomes] |
rs62516748 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs62516749 | 0.93[EUR][1000 genomes] |
rs62516750 | 0.93[EUR][1000 genomes] |
rs62516751 | 0.93[EUR][1000 genomes] |
rs62516752 | 0.93[EUR][1000 genomes] |
rs62516753 | 0.93[EUR][1000 genomes] |
rs62516754 | 0.93[EUR][1000 genomes] |
rs62516755 | 0.93[EUR][1000 genomes] |
rs62516756 | 0.93[EUR][1000 genomes] |
rs62516757 | 0.93[EUR][1000 genomes] |
rs62516758 | 0.93[EUR][1000 genomes] |
rs62516759 | 0.93[EUR][1000 genomes] |
rs62518160 | 0.93[EUR][1000 genomes] |
rs62518180 | 0.93[EUR][1000 genomes] |
rs62518181 | 0.93[EUR][1000 genomes] |
rs62518182 | 0.93[EUR][1000 genomes] |
rs62518183 | 0.93[EUR][1000 genomes] |
rs62518184 | 0.86[EUR][1000 genomes] |
rs62518185 | 0.93[EUR][1000 genomes] |
rs62518186 | 0.93[EUR][1000 genomes] |
rs62518187 | 0.93[EUR][1000 genomes] |
rs62518188 | 0.93[EUR][1000 genomes] |
rs62518189 | 0.93[EUR][1000 genomes] |
rs62518190 | 0.93[EUR][1000 genomes] |
rs62518191 | 1.00[EUR][1000 genomes] |
rs62518192 | 1.00[EUR][1000 genomes] |
rs62518193 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62518194 | 1.00[EUR][1000 genomes] |
rs62518195 | 1.00[EUR][1000 genomes] |
rs62518196 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62518197 | 0.96[EUR][1000 genomes] |
rs62518198 | 0.96[EUR][1000 genomes] |
rs62518199 | 0.96[EUR][1000 genomes] |
rs62518200 | 1.00[EUR][1000 genomes] |
rs62518201 | 1.00[EUR][1000 genomes] |
rs62518202 | 1.00[EUR][1000 genomes] |
rs62518203 | 1.00[EUR][1000 genomes] |
rs62518204 | 1.00[EUR][1000 genomes] |
rs62518205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62518206 | 1.00[EUR][1000 genomes] |
rs62518207 | 1.00[EUR][1000 genomes] |
rs62518208 | 1.00[EUR][1000 genomes] |
rs62518209 | 1.00[EUR][1000 genomes] |
rs62518210 | 1.00[EUR][1000 genomes] |
rs62518211 | 1.00[EUR][1000 genomes] |
rs62518212 | 1.00[EUR][1000 genomes] |
rs62518213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62518215 | 1.00[EUR][1000 genomes] |
rs62518216 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62518217 | 1.00[EUR][1000 genomes] |
rs62518218 | 1.00[EUR][1000 genomes] |
rs62518219 | 0.93[EUR][1000 genomes] |
rs62518220 | 0.89[EUR][1000 genomes] |
rs62518226 | 1.00[EUR][1000 genomes] |
rs62518227 | 1.00[EUR][1000 genomes] |
rs62518228 | 1.00[EUR][1000 genomes] |
rs62518229 | 1.00[EUR][1000 genomes] |
rs6987323 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6997994 | 1.00[EUR][1000 genomes] |
rs7000956 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7002613 | 1.00[EUR][1000 genomes] |
rs7002873 | 1.00[EUR][1000 genomes] |
rs7008048 | 1.00[EUR][1000 genomes] |
rs7008076 | 1.00[EUR][1000 genomes] |
rs7015920 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7815274 | 1.00[EUR][1000 genomes] |
rs7818409 | 1.00[EUR][1000 genomes] |
rs7818711 | 0.97[EUR][1000 genomes] |
rs7823429 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7832104 | 1.00[EUR][1000 genomes] |
rs7838246 | 1.00[EUR][1000 genomes] |
rs7839973 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7844824 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs9298625 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9298626 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9298627 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530880 | chr8:41895241-42755506 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
2 | nsv1034724 | chr8:42386707-42772203 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
3 | nsv1030451 | chr8:42543326-42618390 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv1034121 | chr8:42549810-42618713 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv428516 | chr8:42577171-42731235 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:42577600-42586800 | Weak transcription | Pancreas | Pancrea |
2 | chr8:42577800-42587400 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
3 | chr8:42578800-42587600 | Weak transcription | Primary T cells from cord blood | blood |
4 | chr8:42585600-42588400 | Weak transcription | HepG2 | liver |
5 | chr8:42586000-42591800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
6 | chr8:42586600-42589200 | Enhancers | Primary monocytes fromperipheralblood | blood |