Variant report

Variant	rs28616109
Chromosome Location	chr8:42530364-42530365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:42396014..42397719-chr8:42527925..42530879,2	K562	blood:
2	chr8:42520508..42522998-chr8:42530334..42532173,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168575	Chromatin interaction
ENSG00000176209	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10101564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101973	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10104038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112455	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13439675	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1451241	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1451242	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28413944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28528998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28594607	0.90[AMR][1000 genomes]
rs28621985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28680472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28809511	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28848209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28849085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28850974	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4952	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4953	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55817013	0.90[EUR][1000 genomes]
rs57435730	0.90[EUR][1000 genomes]
rs57499403	0.90[EUR][1000 genomes]
rs57521649	0.90[EUR][1000 genomes]
rs58205452	0.90[EUR][1000 genomes]
rs58279443	0.90[EUR][1000 genomes]
rs59521406	0.90[EUR][1000 genomes]
rs59569717	0.90[EUR][1000 genomes]
rs59689170	0.81[EUR][1000 genomes]
rs59705185	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60926557	0.90[EUR][1000 genomes]
rs61601101	0.84[EUR][1000 genomes]
rs62515862	0.90[EUR][1000 genomes]
rs62515865	0.90[EUR][1000 genomes]
rs62515867	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62515871	0.81[EUR][1000 genomes]
rs62515872	0.81[EUR][1000 genomes]
rs62515873	0.81[EUR][1000 genomes]
rs62516706	0.93[AFR][1000 genomes]
rs62516708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62516710	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62516713	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516715	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516718	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516719	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516738	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516739	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516740	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516741	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516742	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516743	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516744	0.97[EUR][1000 genomes]
rs62516745	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62516746	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516747	0.97[EUR][1000 genomes]
rs62516748	0.97[EUR][1000 genomes]
rs62516749	0.97[EUR][1000 genomes]
rs62516750	0.97[EUR][1000 genomes]
rs62516751	0.97[EUR][1000 genomes]
rs62516752	0.97[EUR][1000 genomes]
rs62516753	0.97[EUR][1000 genomes]
rs62516754	0.97[EUR][1000 genomes]
rs62516755	0.97[EUR][1000 genomes]
rs62516756	0.97[EUR][1000 genomes]
rs62516757	0.97[EUR][1000 genomes]
rs62516758	0.97[EUR][1000 genomes]
rs62516759	0.97[EUR][1000 genomes]
rs62518160	0.97[EUR][1000 genomes]
rs62518180	0.97[EUR][1000 genomes]
rs62518181	0.97[EUR][1000 genomes]
rs62518182	0.97[EUR][1000 genomes]
rs62518183	0.97[EUR][1000 genomes]
rs62518184	0.90[EUR][1000 genomes]
rs62518185	0.97[EUR][1000 genomes]
rs62518186	0.97[EUR][1000 genomes]
rs62518187	0.97[EUR][1000 genomes]
rs62518188	0.97[EUR][1000 genomes]
rs62518189	0.97[EUR][1000 genomes]
rs62518190	0.97[EUR][1000 genomes]
rs62518191	0.90[EUR][1000 genomes]
rs62518192	0.90[EUR][1000 genomes]
rs62518193	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62518194	0.90[EUR][1000 genomes]
rs62518195	0.90[EUR][1000 genomes]
rs62518196	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62518197	0.86[EUR][1000 genomes]
rs62518198	0.86[EUR][1000 genomes]
rs62518199	0.86[EUR][1000 genomes]
rs62518200	0.90[EUR][1000 genomes]
rs62518201	0.90[EUR][1000 genomes]
rs62518202	0.90[EUR][1000 genomes]
rs62518203	0.90[EUR][1000 genomes]
rs62518204	0.90[EUR][1000 genomes]
rs62518205	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62518206	0.90[EUR][1000 genomes]
rs62518207	0.90[EUR][1000 genomes]
rs62518208	0.90[EUR][1000 genomes]
rs62518209	0.90[EUR][1000 genomes]
rs62518210	0.90[EUR][1000 genomes]
rs62518211	0.90[EUR][1000 genomes]
rs62518212	0.90[EUR][1000 genomes]
rs62518213	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62518215	0.90[EUR][1000 genomes]
rs62518216	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62518217	0.90[EUR][1000 genomes]
rs62518218	0.90[EUR][1000 genomes]
rs62518219	0.83[EUR][1000 genomes]
rs62518226	0.90[EUR][1000 genomes]
rs62518227	0.90[EUR][1000 genomes]
rs62518228	0.90[EUR][1000 genomes]
rs62518229	0.90[EUR][1000 genomes]
rs6987323	0.81[EUR][1000 genomes]
rs6997994	0.90[EUR][1000 genomes]
rs7000956	0.81[EUR][1000 genomes]
rs7002613	0.90[EUR][1000 genomes]
rs7002873	0.90[EUR][1000 genomes]
rs7008048	0.90[EUR][1000 genomes]
rs7008076	0.90[EUR][1000 genomes]
rs7015920	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7815274	0.90[EUR][1000 genomes]
rs7818409	0.90[EUR][1000 genomes]
rs7818711	0.87[EUR][1000 genomes]
rs7823429	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7824783	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7832104	0.90[EUR][1000 genomes]
rs7838246	0.90[EUR][1000 genomes]
rs7839973	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7844824	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9298625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9298626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9298627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42522200-42533400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links