Variant report

Variant	rs62518212
Chromosome Location	chr8:42577954-42577955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr8:42577386-42578016	HepG2	liver:	n/a	n/a
2	NR3C1	chr8:42577497-42577999	A549	lung:	n/a	chr8:42577658-42577675
3	EP300	chr8:42577407-42577966	HepG2	liver:	n/a	n/a
4	CEBPB	chr8:42577574-42577958	HepG2	liver:	n/a	chr8:42577760-42577771
5	CEBPB	chr8:42577494-42577973	HepG2	liver:	n/a	chr8:42577760-42577771
6	FOXA1	chr8:42577556-42577954	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000255101	TF binding region

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10101564	0.90[EUR][1000 genomes]
rs10101973	0.93[EUR][1000 genomes]
rs10104038	0.90[EUR][1000 genomes]
rs10112455	0.93[EUR][1000 genomes]
rs13439675	0.93[EUR][1000 genomes]
rs1451241	0.93[EUR][1000 genomes]
rs1451242	0.90[EUR][1000 genomes]
rs16891521	0.90[EUR][1000 genomes]
rs16891530	0.90[EUR][1000 genomes]
rs28413944	0.90[EUR][1000 genomes]
rs28528998	0.90[EUR][1000 genomes]
rs28616109	0.90[EUR][1000 genomes]
rs28621985	0.90[EUR][1000 genomes]
rs28680472	0.90[EUR][1000 genomes]
rs28809511	0.93[EUR][1000 genomes]
rs28848209	0.90[EUR][1000 genomes]
rs28849085	0.90[EUR][1000 genomes]
rs28850974	0.93[EUR][1000 genomes]
rs4952	1.00[EUR][1000 genomes]
rs4953	1.00[EUR][1000 genomes]
rs55817013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57435730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57499403	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57521649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58205452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58279443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59521406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59569717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59689170	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59705185	0.87[EUR][1000 genomes]
rs60926557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61601101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62515862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515867	1.00[EUR][1000 genomes]
rs62515871	0.90[EUR][1000 genomes]
rs62515872	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62515873	0.90[EUR][1000 genomes]
rs62516708	0.90[EUR][1000 genomes]
rs62516710	0.84[EUR][1000 genomes]
rs62516711	0.90[EUR][1000 genomes]
rs62516713	0.93[EUR][1000 genomes]
rs62516715	0.93[EUR][1000 genomes]
rs62516718	0.93[EUR][1000 genomes]
rs62516719	0.93[EUR][1000 genomes]
rs62516738	0.93[EUR][1000 genomes]
rs62516739	0.93[EUR][1000 genomes]
rs62516740	0.93[EUR][1000 genomes]
rs62516741	0.93[EUR][1000 genomes]
rs62516742	0.93[EUR][1000 genomes]
rs62516743	0.90[EUR][1000 genomes]
rs62516744	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516745	0.93[EUR][1000 genomes]
rs62516746	0.90[EUR][1000 genomes]
rs62516747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516748	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516749	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516753	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516754	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62516759	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518180	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518183	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518184	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62518185	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518193	1.00[EUR][1000 genomes]
rs62518194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518196	1.00[EUR][1000 genomes]
rs62518197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62518198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62518199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62518200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518205	1.00[EUR][1000 genomes]
rs62518206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518209	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518213	1.00[EUR][1000 genomes]
rs62518215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518216	1.00[EUR][1000 genomes]
rs62518217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62518220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62518226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987323	0.90[EUR][1000 genomes]
rs6997994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000956	0.90[EUR][1000 genomes]
rs7002613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7002873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008048	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015920	1.00[EUR][1000 genomes]
rs7815274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818711	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823429	0.93[EUR][1000 genomes]
rs7824160	0.93[AMR][1000 genomes]
rs7824783	1.00[EUR][1000 genomes]
rs7832104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839973	0.93[EUR][1000 genomes]
rs7844824	0.93[EUR][1000 genomes]
rs9298625	0.90[EUR][1000 genomes]
rs9298626	0.90[EUR][1000 genomes]
rs9298627	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1030451	chr8:42543326-42618390	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1034121	chr8:42549810-42618713	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42574200-42578000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:42574200-42578000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:42574400-42578800	Enhancers	Fetal Thymus	thymus
4	chr8:42574600-42578000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:42574800-42578000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr8:42575600-42579000	Enhancers	HepG2	liver
7	chr8:42575800-42579400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:42576400-42578000	Enhancers	A549	lung
9	chr8:42577200-42578800	Enhancers	Primary T cells from cord blood	blood
10	chr8:42577600-42578000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:42577600-42578600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr8:42577600-42578600	Weak transcription	Thymus	Thymus
13	chr8:42577600-42582800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:42577600-42586800	Weak transcription	Pancreas	Pancrea
15	chr8:42577800-42587400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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