Variant report

Variant	rs28605268
Chromosome Location	chr4:47276871-47276872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10010157	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10018597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10805153	0.91[ASN][1000 genomes]
rs12502993	0.92[ASN][1000 genomes]
rs1372498	0.94[EUR][1000 genomes]
rs1530302	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16860083	0.94[EUR][1000 genomes]
rs16860087	0.94[EUR][1000 genomes]
rs17600169	0.94[EUR][1000 genomes]
rs28663255	0.94[EUR][1000 genomes]
rs34457317	0.95[EUR][1000 genomes]
rs4403026	0.90[ASN][1000 genomes]
rs4426746	0.90[ASN][1000 genomes]
rs4586906	0.91[ASN][1000 genomes]
rs55807683	0.96[EUR][1000 genomes]
rs6447541	0.94[EUR][1000 genomes]
rs7671741	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47272400-47280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47273200-47280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:47273600-47277200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:47273600-47277400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:47273600-47280400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:47273600-47280800	Weak transcription	Brain Germinal Matrix	brain
7	chr4:47274200-47277600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:47274400-47280000	Weak transcription	Fetal Brain Female	brain
9	chr4:47275200-47279600	Enhancers	Fetal Brain Male	brain
10	chr4:47275400-47280000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:47276800-47277400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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