Variant report

Variant	rs4586906
Chromosome Location	chr4:47278303-47278304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10003607	0.86[CHB][hapmap]
rs10009164	0.93[CHB][hapmap]
rs10016815	0.94[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs10016894	0.94[CHB][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs10017723	0.81[CHB][hapmap]
rs10018597	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10805153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727759	0.94[CHB][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs11931599	0.82[EUR][1000 genomes]
rs12502993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372497	0.94[CHB][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap]
rs1372498	0.88[CHB][hapmap]
rs1372499	0.94[CHB][hapmap]
rs1442091	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs1442108	0.94[CHB][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1442109	0.82[CHB][hapmap]
rs1470208	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1583952	0.94[CHB][hapmap]
rs16860067	0.81[EUR][1000 genomes]
rs16860083	0.89[CHB][hapmap]
rs16860087	0.89[CHB][hapmap]
rs28498348	0.81[EUR][1000 genomes]
rs28605268	0.91[ASN][1000 genomes]
rs3098797	0.94[CHB][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs3098799	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs3098802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3114084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3114088	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3114089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4403026	1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4426746	1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481218	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4695201	0.88[CHB][hapmap]
rs4695202	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs6447541	0.88[CHB][hapmap]
rs6834646	0.82[CHB][hapmap]
rs7666487	0.94[CHB][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7671741	0.94[CHB][hapmap]
rs7695365	0.94[CHB][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47272400-47280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47273200-47280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:47273600-47280400	Weak transcription	Brain Angular Gyrus	brain
4	chr4:47273600-47280800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:47274400-47280000	Weak transcription	Fetal Brain Female	brain
6	chr4:47275200-47279600	Enhancers	Fetal Brain Male	brain
7	chr4:47275400-47280000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:47278000-47280400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:47278200-47280200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:47278200-47280600	Weak transcription	Brain Anterior Caudate	brain

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