Variant report

Variant	rs7671741
Chromosome Location	chr4:47220001-47220002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10002281	0.82[AFR][1000 genomes]
rs10003607	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs10009164	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10010157	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10016815	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10016894	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10017326	0.82[AFR][1000 genomes]
rs10017723	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10018597	0.94[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs10025516	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap]
rs10029262	0.81[YRI][hapmap]
rs10805153	0.94[CHB][hapmap]
rs11727759	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs11931599	0.89[ASN][1000 genomes]
rs12502993	0.94[CHB][hapmap]
rs1372497	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1372498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1372499	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1442091	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1442108	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1442109	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[YRI][hapmap]
rs1470208	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1530302	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1583952	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16860067	0.89[ASN][1000 genomes]
rs16860071	0.88[ASN][1000 genomes]
rs16860083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16860087	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17600169	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17653124	0.82[AFR][1000 genomes]
rs28482891	0.89[ASN][1000 genomes]
rs28498348	0.89[ASN][1000 genomes]
rs28587597	0.90[ASN][1000 genomes]
rs28605268	0.94[EUR][1000 genomes]
rs28663255	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3098797	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3098799	1.00[CHB][hapmap]
rs3098802	0.94[CHB][hapmap]
rs3114084	0.94[CHB][hapmap]
rs3114088	0.94[CHB][hapmap]
rs3114089	0.94[CHB][hapmap]
rs34457317	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4403026	0.94[CHB][hapmap]
rs4426746	0.94[CHB][hapmap]
rs4481218	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4586906	0.94[CHB][hapmap]
rs4695200	0.85[ASN][1000 genomes]
rs4695201	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs4695202	0.94[CHB][hapmap]
rs55807683	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6447541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834646	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7666487	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7673824	0.81[YRI][hapmap]
rs7695365	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47214600-47226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:47217200-47222200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:47217400-47221600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:47218400-47223600	Weak transcription	NH-A	brain
5	chr4:47218400-47223600	Weak transcription	Osteobl	bone
6	chr4:47218400-47223800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:47218600-47220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:47219600-47224000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:47220000-47220400	Enhancers	Fetal Heart	heart

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