Variant report

Variant	rs10018597
Chromosome Location	chr4:47273459-47273460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10003607	0.94[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10009164	0.87[CHB][hapmap]
rs10010157	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10016815	0.88[CHB][hapmap]
rs10016894	0.88[CHB][hapmap]
rs10017723	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs10025516	0.95[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap]
rs10805153	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11727759	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12502993	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1372497	0.88[CHB][hapmap]
rs1372498	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs1372499	0.94[CHB][hapmap]
rs1442091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1442108	0.88[CHB][hapmap]
rs1442109	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs1470208	0.89[CHB][hapmap]
rs1530302	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1583952	0.89[CHB][hapmap]
rs16860083	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs16860087	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs17600169	0.94[EUR][1000 genomes]
rs28605268	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28663255	0.94[EUR][1000 genomes]
rs3098797	0.88[CHB][hapmap]
rs3098799	0.89[CHB][hapmap]
rs3098802	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs3114084	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs3114088	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs3114089	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs34457317	0.95[EUR][1000 genomes]
rs4403026	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4426746	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4481218	0.89[CHB][hapmap]
rs4586906	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4695201	0.84[CHB][hapmap]
rs4695202	0.84[CHB][hapmap]
rs55807683	0.96[EUR][1000 genomes]
rs6447541	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs6834646	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7666487	0.88[CHB][hapmap]
rs7671741	0.94[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs7695365	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47270400-47273600	Enhancers	Brain Anterior Caudate	brain
2	chr4:47270400-47273600	Enhancers	Fetal Brain Male	brain
3	chr4:47271200-47273600	Enhancers	Brain Germinal Matrix	brain
4	chr4:47271400-47274400	Enhancers	Fetal Brain Female	brain
5	chr4:47271600-47273600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:47271600-47273600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:47272000-47273600	Enhancers	Brain Angular Gyrus	brain
8	chr4:47272200-47274200	Enhancers	Brain Cingulate Gyrus	brain
9	chr4:47272400-47280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:47273000-47274000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:47273200-47280600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:47273400-47273800	Enhancers	Brain Hippocampus Middle	brain

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