Variant report

Variant	rs16860087
Chromosome Location	chr4:47229247-47229248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10003607	0.94[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs10009164	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs10010157	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10016815	0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs10016894	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10017723	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs10018597	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs10025516	0.90[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs10805153	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11727759	0.90[CEU][hapmap];0.94[CHB][hapmap]
rs11931599	0.90[ASN][1000 genomes]
rs12502993	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1372497	0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs1372498	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1442091	0.90[CEU][hapmap];0.94[CHB][hapmap]
rs1442108	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1442109	0.90[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap]
rs1470208	0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1530302	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1583952	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs16860067	0.90[ASN][1000 genomes]
rs16860071	0.90[ASN][1000 genomes]
rs16860083	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600169	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28482891	0.90[ASN][1000 genomes]
rs28498348	0.90[ASN][1000 genomes]
rs28587597	0.89[ASN][1000 genomes]
rs28605268	0.94[EUR][1000 genomes]
rs28663255	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098797	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3098799	0.94[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]
rs3098802	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs3114084	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs3114088	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs3114089	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs34457317	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4403026	0.89[CHB][hapmap]
rs4426746	0.89[CHB][hapmap]
rs4481218	0.94[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.90[ASN][1000 genomes]
rs4586906	0.89[CHB][hapmap]
rs4695200	0.87[ASN][1000 genomes]
rs4695201	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4695202	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs55807683	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6447541	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834646	0.94[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs7666487	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7671741	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695365	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv980402	chr4:47225940-47257071	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47226000-47229800	Weak transcription	Placenta Amnion	Placenta Amnion

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