Variant report

Variant	rs4695201
Chromosome Location	chr4:47213203-47213204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10003607	0.82[CHB][hapmap]
rs10009164	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10010157	0.84[ASN][1000 genomes]
rs10016815	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10016894	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10017723	0.83[CHB][hapmap]
rs10018597	0.84[CHB][hapmap]
rs10805153	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs11727759	0.82[CHB][hapmap]
rs11931599	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502993	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs1372497	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372498	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs1372499	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442091	0.84[CHB][hapmap]
rs1442108	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1442109	0.84[CHB][hapmap]
rs1470208	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530302	0.84[ASN][1000 genomes]
rs1583952	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16860067	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16860071	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16860083	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs16860087	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17600169	0.87[ASN][1000 genomes]
rs28482891	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28498348	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28587597	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28663255	0.87[ASN][1000 genomes]
rs3098797	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3098799	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3098802	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs3114084	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs3114088	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs3114089	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs34457317	0.86[ASN][1000 genomes]
rs4403026	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs4426746	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs4481218	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4586906	0.88[CHB][hapmap]
rs4695200	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695202	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs55807683	0.86[ASN][1000 genomes]
rs6447541	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs6834646	0.84[CHB][hapmap]
rs7666487	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671741	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs7695365	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47209200-47215600	Weak transcription	Fetal Heart	heart
2	chr4:47211400-47213400	Enhancers	Osteobl	bone
3	chr4:47211400-47213800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:47211600-47217400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:47211800-47216200	Weak transcription	NHLF	lung
6	chr4:47212000-47213400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:47212000-47216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:47212000-47216200	Weak transcription	HSMMtube	muscle
9	chr4:47212600-47215400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:47212600-47215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:47212800-47213600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:47213000-47214800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:47213200-47214200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:47213200-47214200	Weak transcription	NH-A	brain
15	chr4:47213200-47215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:47213200-47216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:47213200-47216200	Weak transcription	HMEC	breast
18	chr4:47213200-47216400	Weak transcription	HSMM	muscle

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