Variant report

Variant	rs28620139
Chromosome Location	chr8:85578928-85578929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10090567	0.95[EUR][1000 genomes]
rs10095469	0.95[EUR][1000 genomes]
rs10096184	0.95[EUR][1000 genomes]
rs10101057	0.95[EUR][1000 genomes]
rs10103984	1.00[EUR][1000 genomes]
rs10106490	0.95[EUR][1000 genomes]
rs10106879	0.95[EUR][1000 genomes]
rs10107192	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108862	0.95[EUR][1000 genomes]
rs10109673	1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs10110773	0.95[EUR][1000 genomes]
rs10111461	0.95[EUR][1000 genomes]
rs10217027	0.86[YRI][hapmap]
rs10504806	0.80[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10958223	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11984578	1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985257	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985284	0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989459	0.86[YRI][hapmap]
rs11989935	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320767	1.00[TSI][hapmap]
rs1488702	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16913052	0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2029358	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377892	0.95[EUR][1000 genomes]
rs28410514	1.00[EUR][1000 genomes]
rs28470202	1.00[TSI][hapmap]
rs28552445	0.95[EUR][1000 genomes]
rs28615259	1.00[EUR][1000 genomes]
rs28673182	0.95[EUR][1000 genomes]
rs28682420	0.95[EUR][1000 genomes]
rs28690245	0.95[EUR][1000 genomes]
rs28701915	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28748272	1.00[EUR][1000 genomes]
rs28750120	0.95[EUR][1000 genomes]
rs28753755	1.00[EUR][1000 genomes]
rs28792691	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28838665	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982821	0.89[EUR][1000 genomes]
rs6992185	1.00[GIH][hapmap]
rs7009141	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294048	1.00[EUR][1000 genomes]
rs73294082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294084	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817017	0.86[YRI][hapmap]
rs7820782	0.95[EUR][1000 genomes]
rs7824129	0.86[YRI][hapmap]
rs7828348	0.86[YRI][hapmap]
rs7834473	0.95[EUR][1000 genomes]
rs7836891	0.87[TSI][hapmap];0.95[EUR][1000 genomes]
rs7839325	0.95[EUR][1000 genomes]
rs7844228	0.95[EUR][1000 genomes]
rs9657052	0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1017411	chr8:85536245-85596675	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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