Variant report

Variant	rs7828348
Chromosome Location	chr8:85523676-85523677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10090567	0.95[EUR][1000 genomes]
rs10095469	0.95[EUR][1000 genomes]
rs10096184	0.95[EUR][1000 genomes]
rs10101057	0.95[EUR][1000 genomes]
rs10103984	1.00[EUR][1000 genomes]
rs10106490	0.95[EUR][1000 genomes]
rs10106879	0.95[EUR][1000 genomes]
rs10107192	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108862	0.95[EUR][1000 genomes]
rs10109673	1.00[YRI][hapmap]
rs10110773	0.95[EUR][1000 genomes]
rs10111461	0.95[EUR][1000 genomes]
rs10504806	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11984578	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985257	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985284	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989459	1.00[YRI][hapmap]
rs11989935	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1488702	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16913052	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2029358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377892	0.95[EUR][1000 genomes]
rs28410514	1.00[EUR][1000 genomes]
rs28552445	0.95[EUR][1000 genomes]
rs28615259	1.00[EUR][1000 genomes]
rs28620139	0.86[YRI][hapmap]
rs28673182	0.95[EUR][1000 genomes]
rs28682420	0.95[EUR][1000 genomes]
rs28690245	0.95[EUR][1000 genomes]
rs28701915	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28748272	1.00[EUR][1000 genomes]
rs28750120	0.95[EUR][1000 genomes]
rs28753755	1.00[EUR][1000 genomes]
rs28792691	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28838665	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982821	0.89[EUR][1000 genomes]
rs7009141	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294048	1.00[EUR][1000 genomes]
rs73294082	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294084	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817017	1.00[YRI][hapmap]
rs7820782	0.95[EUR][1000 genomes]
rs7824129	1.00[YRI][hapmap]
rs7834473	0.95[EUR][1000 genomes]
rs7836891	0.95[EUR][1000 genomes]
rs7839325	0.95[EUR][1000 genomes]
rs7844228	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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