Variant report

Variant	rs2863174
Chromosome Location	chr11:45264277-45264278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1000664	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10742747	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10769132	0.89[ASN][1000 genomes]
rs2012408	0.85[CEU][hapmap]
rs2863172	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2863173	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2863175	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902427	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902428	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758728	0.87[ASW][hapmap]
rs3793	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816205	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4237652	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4237653	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755307	0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs4755938	0.85[ASN][1000 genomes]
rs4755939	0.84[CHB][hapmap]
rs4755941	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755959	0.85[CEU][hapmap]
rs6416129	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6416130	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs6416131	0.92[ASN][1000 genomes]
rs6416132	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6485604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485606	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7101799	0.95[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs7103871	0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7108623	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7110272	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7114849	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs714720	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7478781	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7481764	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7482931	0.86[ASN][1000 genomes]
rs7940907	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
4	chr11:45252600-45264600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45257000-45264600	Weak transcription	Fetal Intestine Small	intestine
7	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
8	chr11:45260000-45265800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:45261200-45268800	Weak transcription	Fetal Stomach	stomach
10	chr11:45262000-45266600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:45262000-45271400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:45262200-45265200	Weak transcription	Brain Germinal Matrix	brain
13	chr11:45262200-45265200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:45263400-45267200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:45264200-45268000	Strong transcription	Fetal Brain Female	brain

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