Variant report

Variant	rs1000664
Chromosome Location	chr11:45285803-45285804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45200307..45202663-chr11:45284381..45286142,2	MCF-7	breast:
2	chr11:45167741..45169495-chr11:45284745..45287574,2	MCF-7	breast:
3	chr11:45284512..45286727-chr11:45305092..45307914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019505	Chromatin interaction
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10742747	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769132	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863172	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2863173	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2863174	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2863175	0.86[ASN][1000 genomes]
rs2902427	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2902428	0.82[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs3793	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs3816205	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4237652	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237653	0.86[ASN][1000 genomes]
rs4755307	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755313	0.93[EUR][1000 genomes]
rs4755936	0.82[CEU][hapmap]
rs4755938	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755939	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs4755941	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs6416129	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs6416130	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6416131	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6416132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485604	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.88[ASN][1000 genomes]
rs6485606	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103871	0.87[ASW][hapmap];0.81[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110272	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114149	0.90[ASN][1000 genomes]
rs7114849	0.85[ASN][1000 genomes]
rs714720	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7478781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482931	0.99[ASN][1000 genomes]
rs7940907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45281400-45286000	Weak transcription	Colonic Mucosa	Colon
2	chr11:45281600-45286200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:45281800-45286000	Weak transcription	NHDF-Ad	bronchial
4	chr11:45282200-45286000	Weak transcription	NH-A	brain
5	chr11:45282200-45286800	Weak transcription	Pancreas	Pancrea
6	chr11:45282600-45286000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:45282600-45286800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:45282600-45286800	Weak transcription	Fetal Brain Female	brain
9	chr11:45282600-45288800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:45283400-45288800	Enhancers	Fetal Intestine Small	intestine
11	chr11:45283600-45286000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:45284200-45287600	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:45284400-45290200	Enhancers	Fetal Intestine Large	intestine
14	chr11:45284800-45286000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:45284800-45286000	Weak transcription	Osteobl	bone
16	chr11:45284800-45286600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:45285000-45286000	Weak transcription	HSMMtube	muscle
18	chr11:45285000-45286200	Enhancers	A549	lung
19	chr11:45285400-45286000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:45285400-45288600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr11:45285400-45289000	Enhancers	Stomach Mucosa	stomach
22	chr11:45285600-45287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:45285800-45286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:45285800-45286000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:45285800-45286000	Active TSS	HSMM	muscle
26	chr11:45285800-45287400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:45285800-45287400	Enhancers	Small Intestine	intestine
28	chr11:45285800-45287800	Enhancers	HMEC	breast
29	chr11:45285800-45288200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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