Variant report

Variant	rs4755307
Chromosome Location	chr11:45294436-45294437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45292550..45294557-chr11:45296968..45299961,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000664	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10742747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10769132	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11038391	0.90[EUR][1000 genomes]
rs2863172	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2863173	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2863174	0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs2863175	0.85[ASN][1000 genomes]
rs2863185	0.98[EUR][1000 genomes]
rs2902427	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2902428	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs3793	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs3816205	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4237652	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4237653	0.85[ASN][1000 genomes]
rs4755936	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs4755938	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755939	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4755941	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6416129	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6416130	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6416131	0.88[ASN][1000 genomes]
rs6416132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485604	0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6485606	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7101799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103871	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7108623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110272	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7114149	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114849	0.85[ASN][1000 genomes]
rs714720	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs72895349	0.88[EUR][1000 genomes]
rs72895359	0.91[EUR][1000 genomes]
rs7478781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7481764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7482931	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7940907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45289800-45294600	Weak transcription	Pancreas	Pancrea
2	chr11:45290200-45294600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:45293200-45294600	Weak transcription	Gastric	stomach
4	chr11:45293800-45294800	Enhancers	Fetal Intestine Small	intestine
5	chr11:45293800-45295200	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:45293800-45295200	Enhancers	Stomach Mucosa	stomach
7	chr11:45293800-45295200	Enhancers	HMEC	breast
8	chr11:45294000-45294600	Enhancers	HUVEC	blood vessel
9	chr11:45294000-45294800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:45294200-45294800	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:45294200-45295000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:45294400-45294800	Flanking Active TSS	A549	lung

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