Variant report

Variant	rs2863185
Chromosome Location	chr11:45316129-45316130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1000664	0.83[CEU][hapmap]
rs11038391	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2863174	0.80[CEU][hapmap];0.80[YRI][hapmap]
rs4755307	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[EUR][1000 genomes]
rs4755313	0.85[ASN][1000 genomes]
rs4755936	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs6485604	0.80[CEU][hapmap];0.89[YRI][hapmap]
rs6485612	0.83[ASN][1000 genomes]
rs72895349	0.90[EUR][1000 genomes]
rs72895359	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45312800-45317000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:45313000-45316600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:45315000-45316800	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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