Variant report

Variant	rs2863175
Chromosome Location	chr11:45266395-45266396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1000664	0.86[ASN][1000 genomes]
rs10742747	0.85[ASN][1000 genomes]
rs10769132	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2863172	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2863173	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863174	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902427	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2902428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3816205	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4237652	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4237653	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755307	0.85[ASN][1000 genomes]
rs4755938	0.86[ASN][1000 genomes]
rs4755941	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416129	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6416130	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6416131	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6416132	0.86[ASN][1000 genomes]
rs6485604	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485606	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101799	0.85[ASN][1000 genomes]
rs7103871	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108623	0.86[ASN][1000 genomes]
rs7110272	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114849	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs714720	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7478781	0.86[ASN][1000 genomes]
rs7481764	0.86[ASN][1000 genomes]
rs7482931	0.87[ASN][1000 genomes]
rs7940907	0.86[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45261200-45268800	Weak transcription	Fetal Stomach	stomach
6	chr11:45262000-45266600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:45262000-45271400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:45263400-45267200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:45264200-45268000	Strong transcription	Fetal Brain Female	brain
10	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:45265000-45267800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:45265400-45268200	Strong transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:45265400-45270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:45265800-45267800	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:45266000-45266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:45266000-45267600	Enhancers	Fetal Intestine Large	intestine
19	chr11:45266000-45271600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:45266200-45267000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links