Variant report

Variant	rs28641775
Chromosome Location	chr2:171821935-171821936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171810433..171812657-chr2:171821270..171823901,3	K562	blood:
2	chr2:171785538..171787134-chr2:171821536..171823549,2	K562	blood:
3	chr2:171784385..171789962-chr2:171821380..171827816,10	K562	blood:
4	chr2:171821806..171826115-chr2:171826992..171831099,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115806	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10168109	1.00[EUR][1000 genomes]
rs10173304	1.00[EUR][1000 genomes]
rs10174275	1.00[EUR][1000 genomes]
rs10204442	1.00[EUR][1000 genomes]
rs10754976	1.00[EUR][1000 genomes]
rs10803856	1.00[EUR][1000 genomes]
rs10930452	1.00[EUR][1000 genomes]
rs12621215	1.00[EUR][1000 genomes]
rs13382924	1.00[EUR][1000 genomes]
rs13385649	1.00[EUR][1000 genomes]
rs13395368	1.00[EUR][1000 genomes]
rs13408916	1.00[EUR][1000 genomes]
rs13415374	1.00[EUR][1000 genomes]
rs13417630	1.00[EUR][1000 genomes]
rs13418838	1.00[EUR][1000 genomes]
rs13422667	1.00[EUR][1000 genomes]
rs13426912	1.00[EUR][1000 genomes]
rs13428121	1.00[EUR][1000 genomes]
rs1863773	1.00[EUR][1000 genomes]
rs2033161	1.00[EUR][1000 genomes]
rs2052809	1.00[EUR][1000 genomes]
rs2059722	1.00[EUR][1000 genomes]
rs2217151	1.00[EUR][1000 genomes]
rs2217184	1.00[EUR][1000 genomes]
rs2247657	1.00[EUR][1000 genomes]
rs2356372	1.00[EUR][1000 genomes]
rs2555919	1.00[EUR][1000 genomes]
rs2555920	1.00[EUR][1000 genomes]
rs2555921	1.00[EUR][1000 genomes]
rs2555923	1.00[EUR][1000 genomes]
rs2555924	1.00[EUR][1000 genomes]
rs2555925	1.00[EUR][1000 genomes]
rs2555927	1.00[EUR][1000 genomes]
rs2557800	1.00[EUR][1000 genomes]
rs2557801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2557805	1.00[EUR][1000 genomes]
rs2676129	1.00[EUR][1000 genomes]
rs2676134	1.00[EUR][1000 genomes]
rs2676135	1.00[EUR][1000 genomes]
rs2676146	1.00[EUR][1000 genomes]
rs2676148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723237	1.00[EUR][1000 genomes]
rs2723244	1.00[EUR][1000 genomes]
rs2723246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723247	1.00[EUR][1000 genomes]
rs28499279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4027753	1.00[EUR][1000 genomes]
rs4668366	1.00[EUR][1000 genomes]
rs4668367	1.00[EUR][1000 genomes]
rs6433274	1.00[EUR][1000 genomes]
rs6433279	1.00[EUR][1000 genomes]
rs6433280	1.00[EUR][1000 genomes]
rs6721080	1.00[EUR][1000 genomes]
rs6722314	1.00[EUR][1000 genomes]
rs6732108	1.00[EUR][1000 genomes]
rs6735986	1.00[EUR][1000 genomes]
rs6749884	1.00[EUR][1000 genomes]
rs6751462	1.00[EUR][1000 genomes]
rs6761606	1.00[EUR][1000 genomes]
rs73027301	1.00[EUR][1000 genomes]
rs7560590	1.00[EUR][1000 genomes]
rs7582081	1.00[EUR][1000 genomes]
rs7584937	1.00[EUR][1000 genomes]
rs964171	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171787600-171829800	Weak transcription	Right Atrium	heart
2	chr2:171797000-171830600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:171803600-171824600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:171803800-171824400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:171803800-171825600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr2:171804000-171825000	Strong transcription	HepG2	liver
7	chr2:171804800-171824800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:171804800-171825800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:171805000-171824800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:171805000-171825000	Strong transcription	Dnd41	blood
11	chr2:171805200-171824800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:171805400-171824600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:171805400-171825000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:171805400-171825200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:171805400-171825400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:171805400-171825600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr2:171805400-171825800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:171805400-171825800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:171805600-171824600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:171805600-171824600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:171805600-171825800	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr2:171805800-171823800	Strong transcription	NHDF-Ad	bronchial
23	chr2:171805800-171825200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr2:171805800-171825800	Strong transcription	Placenta	Placenta
25	chr2:171805800-171825800	Strong transcription	Osteobl	bone
26	chr2:171805800-171826200	Strong transcription	Fetal Thymus	thymus
27	chr2:171806000-171822200	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr2:171806000-171822400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr2:171806000-171823400	Strong transcription	Liver	Liver
30	chr2:171806000-171823800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:171806000-171824400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:171806000-171824400	Strong transcription	Left Ventricle	heart
33	chr2:171806000-171824800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr2:171806000-171825000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:171806000-171825000	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr2:171806000-171825200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr2:171806000-171825200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:171806000-171825400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr2:171806000-171825800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr2:171806000-171826000	Strong transcription	Fetal Stomach	stomach
41	chr2:171806000-171826200	Strong transcription	Fetal Intestine Large	intestine
42	chr2:171806000-171826200	Strong transcription	Thymus	Thymus
43	chr2:171806000-171826800	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:171806200-171824000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:171807600-171824800	Strong transcription	Primary B cells from cord blood	blood
46	chr2:171807800-171824000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr2:171808200-171824400	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr2:171808200-171824600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr2:171808600-171825000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr2:171809200-171826200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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