The 2.0 version of rSNPBase

Variant report

Variant rs13418838
Chromosome Location chr2:171946578-171946579
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:171900400-171975400 Weak transcription Aorta Aorta
2 chr2:171916600-171950200 Weak transcription H9 Cell Line embryonic stem cell
3 chr2:171916600-171970800 Weak transcription Ovary ovary
4 chr2:171917000-171948000 Weak transcription Fetal Muscle Leg muscle
5 chr2:171917000-171953200 Weak transcription HSMM muscle
6 chr2:171917000-171956600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr2:171917000-172000800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr2:171929600-171956600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr2:171931200-171950200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr2:171933200-171954000 Weak transcription Fetal Stomach stomach
11 chr2:171933200-171954200 Weak transcription Esophagus oesophagus
12 chr2:171933200-171981000 Weak transcription Rectal Smooth Muscle rectum
13 chr2:171933800-171953200 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr2:171934000-171955800 Weak transcription Duodenum Mucosa Duodenum
15 chr2:171937400-171951200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr2:171937600-171947400 Weak transcription Fetal Intestine Large intestine
17 chr2:171937600-171948000 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr2:171937600-171953600 Weak transcription Fetal Intestine Small intestine
19 chr2:171937600-171956800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:171938400-171953400 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr2:171938400-171953600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr2:171938600-171946800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr2:171939200-171947600 Weak transcription Dnd41 blood
24 chr2:171939200-171948600 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr2:171939200-171950400 Weak transcription Primary monocytes fromperipheralblood blood
26 chr2:171940200-171947400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:171941000-171954200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr2:171941200-171948800 Weak transcription Stomach Smooth Muscle stomach
29 chr2:171941200-171954400 Weak transcription NHEK skin
30 chr2:171941800-171950200 Weak transcription H1 Cell Line embryonic stem cell
31 chr2:171942800-171947200 Enhancers Liver Liver
32 chr2:171943200-171947400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:171943400-171948800 Weak transcription Colon Smooth Muscle Colon
34 chr2:171943400-171949800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr2:171943400-171959600 Weak transcription Left Ventricle heart
36 chr2:171943400-171973800 Weak transcription NH-A brain
37 chr2:171943600-171947600 Weak transcription Primary B cells from peripheral blood blood
38 chr2:171943600-171948000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr2:171943600-171948600 Weak transcription Fetal Lung lung
40 chr2:171943600-171954200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr2:171943600-171954400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr2:171943600-171956200 Weak transcription Placenta Placenta
43 chr2:171943800-171949400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr2:171943800-171950000 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr2:171943800-171951400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr2:171943800-171951800 Weak transcription A549 lung
47 chr2:171943800-171953400 Weak transcription Primary hematopoietic stem cells blood
48 chr2:171944000-171947600 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr2:171944000-171947600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr2:171944000-171953400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015