Variant report

Variant	rs28668016
Chromosome Location	chr15:55611433-55611434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:464)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:464 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:55610976-55611748	NB4	blood:	n/a	n/a
2	EP300	chr15:55611182-55611542	SK-N-SH_RA	brain:	n/a	chr15:55611342-55611349
3	ATF2	chr15:55611262-55611615	H1-hESC	embryonic stem cell:	n/a	n/a
4	ELF1	chr15:55611022-55611632	K562	blood:	n/a	chr15:55611342-55611351 chr15:55611341-55611352 chr15:55611340-55611353 chr15:55611341-55611352
5	RFX5	chr15:55610877-55612079	Hela-S3	cervix:	n/a	n/a
6	CHD2	chr15:55611098-55611496	H1-hESC	embryonic stem cell:	n/a	n/a
7	TCF12	chr15:55611045-55611552	GM12878	blood:	n/a	n/a
8	YY1	chr15:55611272-55611673	K562	blood:	n/a	n/a
9	TAF1	chr15:55611005-55611647	MCF-7	breast:	n/a	n/a
10	NFYA	chr15:55610967-55611472	Hela-S3	cervix:	n/a	n/a
11	ZBTB33	chr15:55611052-55611615	A549	lung:	n/a	n/a
12	FOXP2	chr15:55611177-55611531	SK-N-MC	brain:	n/a	n/a
13	MAZ	chr15:55611019-55611771	Hela-S3	cervix:	n/a	n/a
14	PAX5	chr15:55611101-55611509	GM12892	blood:	n/a	n/a
15	NFATC1	chr15:55610789-55611563	GM12878	blood:	n/a	n/a
16	TAF1	chr15:55611097-55611688	GM12891	blood:	n/a	n/a
17	ZKSCAN1	chr15:55610980-55611575	Hela-S3	cervix:	n/a	n/a
18	SIN3AK20	chr15:55610992-55611550	A549	lung:	n/a	n/a
19	REST	chr15:55611131-55611558	K562	blood:	n/a	n/a
20	CCNT2	chr15:55611021-55611626	K562	blood:	n/a	n/a
21	MAX	chr15:55611142-55611471	HepG2	liver:	n/a	n/a
22	CHD2	chr15:55610961-55611720	Hela-S3	cervix:	n/a	n/a
23	ELK4	chr15:55610949-55611725	Hela-S3	cervix:	n/a	chr15:55611339-55611350
24	POLR2A	chr15:55610913-55611874	GM18526	blood:	n/a	n/a
25	MAZ	chr15:55611205-55611745	HepG2	liver:	n/a	n/a
26	POLR2A	chr15:55610869-55611974	K562	blood:	n/a	n/a
27	HCFC1	chr15:55610390-55612750	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr15:55610739-55611890	GM12878	blood:	n/a	n/a
29	POLR2A	chr15:55611010-55611634	A549	lung:	n/a	n/a
30	YY1	chr15:55610972-55611712	ECC-1	luminal epithelium:	n/a	n/a
31	RCOR1	chr15:55610733-55612863	IMR90	lung:	n/a	n/a
32	USF1	chr15:55610911-55611613	A549	lung:	n/a	n/a
33	POLR2A	chr15:55610768-55611635	SK-N-SH	brain:	n/a	n/a
34	REST	chr15:55611281-55611433	GM12878	blood:	n/a	n/a
35	ZNF217	chr15:55610970-55611495	MCF-7	breast:	n/a	n/a
36	HCFC1	chr15:55610979-55612477	K562	blood:	n/a	n/a
37	YY1	chr15:55611086-55611826	K562	blood:	n/a	n/a
38	CEBPB	chr15:55610931-55611562	GM12878	blood:	n/a	n/a
39	E2F6	chr15:55611136-55611502	K562	blood:	n/a	n/a
40	STAT3	chr15:55611223-55611524	MCF10A-Er-Src	breast:	n/a	n/a
41	POLR2A	chr15:55610904-55611851	GM12878	blood:	n/a	n/a
42	ZBTB7A	chr15:55611111-55611729	K562	blood:	n/a	n/a
43	MAFK	chr15:55611008-55611577	HepG2	liver:	n/a	n/a
44	IRF4	chr15:55610950-55611595	GM12878	blood:	n/a	n/a
45	RAD21	chr15:55611058-55611581	H1-hESC	embryonic stem cell:	n/a	n/a
46	MYC	chr15:55611235-55611435	K562	blood:	n/a	n/a
47	POLR2A	chr15:55611100-55611639	A549	lung:	n/a	n/a
48	POLR2A	chr15:55610943-55611703	GM12878	blood:	n/a	n/a
49	REST	chr15:55611183-55611572	SK-N-SH	brain:	n/a	n/a
50	SMARCB1	chr15:55610774-55611712	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:55611424-55611474	HRE	kidney:	n/a
2	chr15:55611424-55611474	SAEC	small airway:	n/a
3	chr15:55611424-55611474	SK-N-SH_RA	brain:	n/a
4	chr15:55611424-55611474	RPTEC	kidney:	n/a
5	chr15:55611424-55611474	HIPEpiC	eye:	n/a
6	chr15:55611424-55611474	AG09309	skin:	n/a
7	chr15:55611424-55611474	HepG2	liver:	n/a
8	chr15:55611424-55611474	Hepatocyte	liver:	n/a
9	chr15:55611424-55611474	GM06990	blood:	n/a
10	chr15:55611424-55611474	ProgFib	skin:	n/a
11	chr15:55611424-55611474	AG04450	lung:	fetal
12	chr15:55611424-55611474	U87	brain:	n/a
13	chr15:55611424-55611474	Hela-S3	cervix:	n/a
14	chr15:55611424-55611474	LNCaP	prostate:	n/a
15	chr15:55611424-55611474	BE2_C	brain:	n/a
16	chr15:55611424-55611474	NHDF-neo	bronchial:	n/a
17	chr15:55611424-55611474	IMR90	lung:	fetal
18	chr15:55611424-55611474	HCF	heart:	n/a
19	chr15:55611424-55611474	MCF10A-Er-Src	breast:	n/a
20	chr15:55611424-55611474	PFSK-1	brain:	n/a
21	chr15:55611424-55611474	HAEpiC	amniotic membrane:	n/a
22	chr15:55611424-55611474	SK-N-SH	brain:	n/a
23	chr15:55611424-55611474	K562	blood:	n/a
24	chr15:55611424-55611474	ECC-1	luminal epithelium:	n/a
25	chr15:55611424-55611474	GM12892	blood:	n/a
26	chr15:55611424-55611474	HUVEC	blood vessel:	n/a
27	chr15:55611424-55611474	NH-A	brain:	n/a
28	chr15:55611424-55611474	MCF-7	breast:	n/a
29	chr15:55611424-55611474	H1-hESC	embryonic stem cell:	embryo
30	chr15:55611424-55611474	HCM	heart:	n/a
31	chr15:55611424-55611474	PANC-1	pancreas:	n/a
32	chr15:55611424-55611474	HEEpiC	esophagus:	n/a
33	chr15:55611424-55611474	HPAEpiC	pulmonary alveolar:	n/a
34	chr15:55611424-55611474	Jurkat	blood:	n/a
35	chr15:55611424-55611474	PrEC	prostate:	n/a
36	chr15:55611424-55611474	HEK293	kidney:	embryo
37	chr15:55611424-55611474	SKMC	muscle:	n/a
38	chr15:55611424-55611474	HRPEpiC	eye:	n/a
39	chr15:55611424-55611474	CMK	blood:	n/a
40	chr15:55611424-55611474	HNPCEpiC	eye:	n/a
41	chr15:55611424-55611474	HRCEpiC	kidney:	n/a
42	chr15:55611424-55611474	AG04449	skin:	fetal
43	chr15:55611424-55611474	NHBE	bronchial:	n/a
44	chr15:55611424-55611474	A549	lung:	n/a
45	chr15:55611424-55611474	T-47D	breast:	n/a
46	chr15:55611424-55611474	BJ	skin:	n/a
47	chr15:55611424-55611474	ovcar-3	ovarian:	n/a
48	chr15:55611424-55611474	HL-60	blood:	n/a
49	chr15:55611424-55611474	HCT-116	colon:	n/a
50	chr15:55611424-55611474	NB4	blood:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55607556..55615100-chr15:55699006..55703115,13	K562	blood:
2	chr15:55579295..55584870-chr15:55607881..55612970,10	K562	blood:
3	chr15:55607682..55613892-chr15:55697623..55703247,7	K562	blood:
4	chr1:11967895..11968556-chr15:55611005..55611758,2	Hela-S3	cervix:
5	chr15:55610603..55613441-chr15:55640435..55642887,3	K562	blood:
6	chr15:55611060..55611901-chr3:128968118..128968744,2	Hela-S3	cervix:
7	chr15:55609877..55611698-chr15:55698360..55701817,3	MCF-7	breast:
8	chr15:52860513..52862699-chr15:55611421..55613423,2	K562	blood:
9	chr1:28975054..28975618-chr15:55610819..55611592,2	Hela-S3	cervix:
10	chr15:55611231..55613781-chr15:55650210..55652100,2	MCF-7	breast:
11	chr15:55580259..55584808-chr15:55609765..55612829,5	K562	blood:
12	chr15:55610806..55611563-chr6:18264351..18265271,2	Hela-S3	cervix:
13	chr15:55610027..55612992-chr15:55688713..55692198,3	K562	blood:
14	chr15:55608625..55613147-chr15:55698683..55702764,8	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-178D12.1.1-4	chr15:55611430-55611611	NONHSAT043990

No data

Variant related genes	Relation type
PIGB	TF binding region
ENSG00000225973	TF binding region
RAB27A	TF binding region
ENSG00000225973	CpG island
RAB27A	CpG island
PIGB	CpG island
ENSG00000260916	Chromatin interaction
ENSG00000069943	Chromatin interaction
ENSG00000261652	Chromatin interaction
ENSG00000181789	Chromatin interaction
ENSG00000069974	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000124795	Chromatin interaction
ENSG00000270103	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10851588	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11071174	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs11071176	0.81[ASN][1000 genomes]
rs11071180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11071181	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11490399	0.89[ASN][1000 genomes]
rs11629613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11630409	0.83[ASN][1000 genomes]
rs11632757	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11634665	0.81[ASN][1000 genomes]
rs11635303	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11635532	0.97[ASN][1000 genomes]
rs11636687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11638111	0.91[ASN][1000 genomes]
rs11638732	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11639418	0.95[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs11639453	0.95[ASN][1000 genomes]
rs11855382	0.83[ASN][1000 genomes]
rs11857303	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12050587	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12050662	0.89[ASN][1000 genomes]
rs12050663	0.89[ASN][1000 genomes]
rs12050885	0.91[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs12050905	0.86[ASN][1000 genomes]
rs2290341	0.94[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2290343	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290344	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2305424	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2414409	1.00[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs28540063	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28636865	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28657774	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28680176	0.89[ASN][1000 genomes]
rs28706887	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28748576	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34848296	0.91[ASN][1000 genomes]
rs3743203	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4774760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774764	0.90[ASN][1000 genomes]
rs4774766	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55661134	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55933611	0.99[ASN][1000 genomes]
rs55957229	0.81[ASN][1000 genomes]
rs56159619	0.81[ASN][1000 genomes]
rs56257633	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58701687	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60338710	0.84[ASN][1000 genomes]
rs60375490	0.81[ASN][1000 genomes]
rs61387252	0.81[ASN][1000 genomes]
rs61573749	0.84[ASN][1000 genomes]
rs67230579	0.96[ASN][1000 genomes]
rs67603645	0.92[ASN][1000 genomes]
rs692062	0.85[MEX][hapmap]
rs7162777	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174876	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7183157	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7183960	1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs72742273	0.95[ASN][1000 genomes]
rs72742282	0.92[ASN][1000 genomes]
rs8024695	0.86[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs9920058	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9920522	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv569524	chr15:55558624-55612511	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs28668016	ENSG00000069943	cis	multi-tissue	Pritchard
rs28668016	RAB27A	cis	parietal	SCAN
rs28668016	PIGB	Cis_1M	lymphoblastoid	RTeQTL
rs28668016	PIGB	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55609600-55612400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:55609800-55611800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr15:55610000-55611800	Active TSS	Muscle Satellite Cultured Cells	--
4	chr15:55610000-55612000	Active TSS	Brain Cingulate Gyrus	brain
5	chr15:55610000-55612200	Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr15:55610000-55612400	Active TSS	A549	lung
7	chr15:55610000-55613200	Active TSS	GM12878-XiMat	blood
8	chr15:55610200-55611600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:55610200-55611800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:55610200-55611800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:55610200-55612000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:55610200-55612000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:55610200-55612000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:55610200-55612000	Active TSS	Rectal Smooth Muscle	rectum
15	chr15:55610200-55612000	Active TSS	Right Atrium	heart
16	chr15:55610200-55612000	Active TSS	HSMM	muscle
17	chr15:55610200-55612600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:55610200-55612800	Active TSS	HMEC	breast
19	chr15:55610200-55613400	Active TSS	K562	blood
20	chr15:55610400-55611600	Active TSS	Placenta	Placenta
21	chr15:55610400-55611800	Active TSS	Duodenum Mucosa	Duodenum
22	chr15:55610400-55611800	Active TSS	Gastric	stomach
23	chr15:55610400-55611800	Active TSS	Pancreas	Pancrea
24	chr15:55610400-55611800	Active TSS	Dnd41	blood
25	chr15:55610400-55611800	Active TSS	Hela-S3	cervix
26	chr15:55610400-55612000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:55610400-55612000	Active TSS	Right Ventricle	heart
28	chr15:55610400-55612200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:55610400-55612200	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr15:55610400-55612400	Active TSS	Brain Anterior Caudate	brain
31	chr15:55610400-55612400	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr15:55610400-55612600	Active TSS	Stomach Smooth Muscle	stomach
33	chr15:55610400-55612800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:55610600-55611600	Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr15:55610600-55611600	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr15:55610600-55611600	Active TSS	Liver	Liver
37	chr15:55610600-55611600	Active TSS	Fetal Intestine Small	intestine
38	chr15:55610600-55611600	Active TSS	Placenta Amnion	Placenta Amnion
39	chr15:55610600-55611600	Active TSS	HSMMtube	muscle
40	chr15:55610600-55611800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:55610600-55611800	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr15:55610600-55611800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:55610600-55611800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:55610600-55611800	Active TSS	Primary T cells from cord blood	blood
45	chr15:55610600-55611800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:55610600-55611800	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr15:55610600-55611800	Active TSS	Brain Angular Gyrus	brain
48	chr15:55610600-55611800	Active TSS	Colonic Mucosa	Colon
49	chr15:55610600-55611800	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr15:55610600-55611800	Active TSS	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links