The 2.0 version of rSNPBase

Variant report

Variant rs28774401
Chromosome Location chr5:112409731-112409732
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112363800-112417800 Weak transcription Duodenum Mucosa Duodenum
2 chr5:112371400-112423800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr5:112379600-112424200 Weak transcription Psoas Muscle Psoas
4 chr5:112384000-112453000 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr5:112384200-112411000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr5:112390800-112410800 Weak transcription Fetal Intestine Small intestine
7 chr5:112391600-112439000 Weak transcription Gastric stomach
8 chr5:112395000-112411600 Strong transcription Breast Myoepithelial Primary Cells Breast
9 chr5:112395600-112417600 Weak transcription Brain Angular Gyrus brain
10 chr5:112395600-112420400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr5:112396000-112417200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr5:112398600-112409800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr5:112398800-112412400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr5:112399000-112432800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr5:112399200-112417600 Weak transcription Fetal Kidney kidney
16 chr5:112399800-112441800 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr5:112400000-112417600 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr5:112400200-112411400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr5:112400200-112416800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:112400200-112416800 Weak transcription Muscle Satellite Cultured Cells --
21 chr5:112400400-112411200 Weak transcription Thymus Thymus
22 chr5:112400800-112423800 Weak transcription Aorta Aorta
23 chr5:112401800-112410600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr5:112402600-112425600 Weak transcription Rectal Smooth Muscle rectum
25 chr5:112402800-112410600 Weak transcription Fetal Intestine Large intestine
26 chr5:112402800-112410600 Weak transcription Pancreas Pancrea
27 chr5:112403000-112410600 Weak transcription Spleen Spleen
28 chr5:112403800-112418400 Weak transcription Brain Substantia Nigra brain
29 chr5:112404000-112413800 Weak transcription Brain Hippocampus Middle brain
30 chr5:112404000-112426000 Weak transcription Brain Cingulate Gyrus brain
31 chr5:112404200-112410800 Weak transcription Brain Germinal Matrix brain
32 chr5:112404400-112411800 Strong transcription Stomach Smooth Muscle stomach
33 chr5:112404400-112428000 Weak transcription Placenta Placenta
34 chr5:112404400-112436800 Weak transcription Fetal Brain Male brain
35 chr5:112404600-112410600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr5:112404600-112411200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr5:112404600-112411600 Weak transcription Fetal Lung lung
38 chr5:112404600-112417000 Weak transcription HSMMtube muscle
39 chr5:112404800-112425400 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr5:112405000-112410000 Enhancers HUES6 Cell Line embryonic stem cell
41 chr5:112405200-112410400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr5:112405200-112410600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:112405600-112410600 Weak transcription Adipose Nuclei Adipose
44 chr5:112405800-112410800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr5:112405800-112410800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr5:112406000-112416800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr5:112406800-112413600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr5:112406800-112416800 Weak transcription HMEC breast
49 chr5:112407000-112410400 Weak transcription Esophagus oesophagus
50 chr5:112407000-112416800 Weak transcription NHEK skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015