The 2.0 version of rSNPBase

Variant report

Variant rs6866718
Chromosome Location chr5:112406579-112406580
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112363800-112409200 Weak transcription Colonic Mucosa Colon
2 chr5:112363800-112417800 Weak transcription Duodenum Mucosa Duodenum
3 chr5:112370200-112406600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr5:112371400-112423800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr5:112379600-112424200 Weak transcription Psoas Muscle Psoas
6 chr5:112383200-112409400 Strong transcription Liver Liver
7 chr5:112384000-112453000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr5:112384200-112411000 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr5:112390800-112410800 Weak transcription Fetal Intestine Small intestine
10 chr5:112391600-112439000 Weak transcription Gastric stomach
11 chr5:112395000-112411600 Strong transcription Breast Myoepithelial Primary Cells Breast
12 chr5:112395600-112417600 Weak transcription Brain Angular Gyrus brain
13 chr5:112395600-112420400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr5:112395800-112408600 Weak transcription Brain Anterior Caudate brain
15 chr5:112395800-112409000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr5:112396000-112417200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:112398400-112407400 Strong transcription Cortex derived primary cultured neurospheres brain
18 chr5:112398600-112407000 Strong transcription NHEK skin
19 chr5:112398600-112409800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr5:112398800-112412400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr5:112399000-112406800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr5:112399000-112432800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr5:112399200-112417600 Weak transcription Fetal Kidney kidney
24 chr5:112399800-112408400 Weak transcription Right Atrium heart
25 chr5:112399800-112441800 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr5:112400000-112417600 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr5:112400200-112411400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:112400200-112416800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr5:112400200-112416800 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:112400400-112411200 Weak transcription Thymus Thymus
31 chr5:112400800-112423800 Weak transcription Aorta Aorta
32 chr5:112401800-112410600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr5:112402000-112407000 Strong transcription Esophagus oesophagus
34 chr5:112402400-112408200 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr5:112402600-112407800 Weak transcription Primary T cells from cord blood blood
36 chr5:112402600-112425600 Weak transcription Rectal Smooth Muscle rectum
37 chr5:112402800-112410600 Weak transcription Fetal Intestine Large intestine
38 chr5:112402800-112410600 Weak transcription Pancreas Pancrea
39 chr5:112403000-112407200 Weak transcription Lung lung
40 chr5:112403000-112408400 Weak transcription Primary T cells fromperipheralblood blood
41 chr5:112403000-112409000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr5:112403000-112410600 Weak transcription Spleen Spleen
43 chr5:112403800-112418400 Weak transcription Brain Substantia Nigra brain
44 chr5:112404000-112413800 Weak transcription Brain Hippocampus Middle brain
45 chr5:112404000-112426000 Weak transcription Brain Cingulate Gyrus brain
46 chr5:112404200-112410800 Weak transcription Brain Germinal Matrix brain
47 chr5:112404400-112408200 Strong transcription Left Ventricle heart
48 chr5:112404400-112411800 Strong transcription Stomach Smooth Muscle stomach
49 chr5:112404400-112428000 Weak transcription Placenta Placenta
50 chr5:112404400-112436800 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015