Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1336641	0.93[ASN][1000 genomes]
rs1336645	0.93[ASN][1000 genomes]
rs1336646	0.91[ASN][1000 genomes]
rs1336647	0.91[ASN][1000 genomes]
rs1336649	0.93[ASN][1000 genomes]
rs1336650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556754	0.83[ASN][1000 genomes]
rs1556755	0.81[ASN][1000 genomes]
rs1932774	0.91[ASN][1000 genomes]
rs1953613	0.80[EUR][1000 genomes]
rs1999788	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3798969	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3798979	0.98[ASN][1000 genomes]
rs3798988	0.91[ASN][1000 genomes]
rs3798991	0.93[ASN][1000 genomes]
rs3798992	0.92[ASN][1000 genomes]
rs3798993	0.93[ASN][1000 genomes]
rs3823064	0.97[ASN][1000 genomes]
rs6899467	0.91[ASN][1000 genomes]
rs9446079	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454661	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945528	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain

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