Variant report

Variant	rs9454661
Chromosome Location	chr6:69678964-69678965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69656160..69659095-chr6:69677328..69679855,2	K562	blood:
2	chr6:69676667..69679065-chr6:69686722..69689222,2	K562	blood:
3	chr6:69676667..69679537-chr6:69686722..69688400,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006997	0.91[JPT][hapmap]
rs1336641	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs1336645	0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs1336646	0.89[ASN][1000 genomes]
rs1336647	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs1336648	0.91[JPT][hapmap]
rs1336649	0.91[ASN][1000 genomes]
rs1336650	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415030	0.86[JPT][hapmap]
rs1556754	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs1556755	0.80[ASN][1000 genomes]
rs1932774	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1953613	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1999787	0.86[JPT][hapmap]
rs1999788	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2860121	0.86[JPT][hapmap]
rs2880587	1.00[JPT][hapmap]
rs2880588	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798969	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3798974	1.00[JPT][hapmap]
rs3798979	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3798983	0.82[JPT][hapmap]
rs3798988	0.89[ASN][1000 genomes]
rs3798991	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3798992	0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs3798993	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs3823064	0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6899467	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7757025	0.82[JPT][hapmap]
rs9354812	0.86[JPT][hapmap]
rs9446079	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945528	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69678200-69679400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
9	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain

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