Variant report

Variant	rs2860121
Chromosome Location	chr6:69710102-69710103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69705335..69707622-chr6:69708224..69711440,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006997	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1283903	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1336638	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1336641	0.87[JPT][hapmap]
rs1336645	0.86[JPT][hapmap]
rs1336647	0.86[JPT][hapmap]
rs1336648	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336650	0.86[JPT][hapmap]
rs1415030	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1415035	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1556754	0.87[JPT][hapmap]
rs1932774	0.85[JPT][hapmap]
rs1953615	0.83[ASN][1000 genomes]
rs1999787	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2785575	0.91[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2880587	0.86[JPT][hapmap]
rs3798969	0.83[JPT][hapmap]
rs3798974	0.86[JPT][hapmap]
rs3798979	0.81[JPT][hapmap]
rs3798991	0.87[JPT][hapmap]
rs3798992	0.86[JPT][hapmap]
rs3798993	0.86[JPT][hapmap]
rs3823064	0.86[JPT][hapmap]
rs590369	0.82[EUR][1000 genomes]
rs602822	0.90[CEU][hapmap]
rs618714	0.88[CEU][hapmap]
rs6899467	0.87[JPT][hapmap]
rs7757025	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9354812	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9454661	0.86[JPT][hapmap]
rs945528	0.87[JPT][hapmap]
rs945529	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
3	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
4	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
5	chr6:69700800-69710200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
10	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69703800-69719400	Weak transcription	Fetal Brain Female	brain
14	chr6:69704800-69713000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:69704800-69721600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:69705400-69711600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:69706400-69720800	Weak transcription	Fetal Lung	lung
18	chr6:69706600-69721600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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