Variant report

Variant	rs1283903
Chromosome Location	chr6:69738032-69738033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1006997	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336638	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1336648	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1415030	0.84[ASN][1000 genomes]
rs1415035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999787	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860121	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs590369	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs602822	0.81[EUR][1000 genomes]
rs7757025	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9354812	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs945529	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
4	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69736000-69738200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:69736000-69738200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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