Variant report

Variant	rs1006997
Chromosome Location	chr6:69677322-69677323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69671912..69674615-chr6:69676195..69678865,4	K562	blood:
2	chr6:69676667..69679065-chr6:69686722..69689222,2	K562	blood:
3	chr6:69676667..69679537-chr6:69686722..69688400,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12207529	1.00[YRI][hapmap]
rs1283903	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336638	0.81[JPT][hapmap]
rs1336641	0.91[JPT][hapmap]
rs1336645	0.91[JPT][hapmap]
rs1336647	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1336648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1336650	0.91[JPT][hapmap]
rs1415030	0.95[JPT][hapmap]
rs1415035	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1556754	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1556755	0.84[ASN][1000 genomes]
rs1932774	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1953615	0.86[ASN][1000 genomes]
rs1999787	1.00[CEU][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2785575	0.89[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2860121	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2880587	0.91[JPT][hapmap]
rs3798969	0.86[JPT][hapmap]
rs3798974	0.91[JPT][hapmap]
rs3798979	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs3798991	0.91[JPT][hapmap]
rs3798992	0.91[JPT][hapmap]
rs3798993	0.91[JPT][hapmap]
rs3823064	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs602822	0.88[CEU][hapmap]
rs618714	0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap]
rs6899467	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7757025	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9354812	0.89[CEU][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[EUR][1000 genomes]
rs9454661	0.91[JPT][hapmap]
rs945528	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs945529	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69674000-69677800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69676400-69677600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69676800-69678200	Flanking Active TSS	K562	blood
14	chr6:69676800-69678400	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:69677200-69677600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:69677200-69677600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:69677200-69678200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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