Variant report

Variant	rs1336638
Chromosome Location	chr6:69717102-69717103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1006997	0.81[JPT][hapmap]
rs1283903	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1336648	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1415030	0.95[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415035	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1999787	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2785575	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2860121	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs590369	0.89[ASN][1000 genomes]
rs602822	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs618714	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7757025	0.81[ASN][1000 genomes]
rs9354812	0.86[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
3	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:69703800-69719400	Weak transcription	Fetal Brain Female	brain
11	chr6:69704800-69721600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69706400-69720800	Weak transcription	Fetal Lung	lung
13	chr6:69706600-69721600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69711600-69717600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:69713000-69721400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:69716800-69717800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:69717000-69717600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:69717000-69718200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:69717000-69718600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:69717000-69719000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:69717000-69719000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:69717000-69719200	Enhancers	HUES64 Cell Line	embryonic stem cell

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