Variant report

Variant	rs9354812
Chromosome Location	chr6:69706344-69706345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69704465..69706532-chr6:69711513..69713014,2	K562	blood:
2	chr6:69699072..69700875-chr6:69703905..69706517,2	K562	blood:
3	chr6:69705335..69707622-chr6:69708224..69711440,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1006997	0.89[CEU][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[EUR][1000 genomes]
rs12213405	0.84[LWK][hapmap]
rs1283903	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1336638	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1336641	0.86[JPT][hapmap]
rs1336645	0.86[JPT][hapmap]
rs1336647	0.85[JPT][hapmap]
rs1336648	0.89[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1336650	0.86[JPT][hapmap]
rs1415029	0.84[LWK][hapmap]
rs1415030	0.83[ASW][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1415035	0.89[CEU][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1556754	0.86[JPT][hapmap]
rs1932774	0.84[JPT][hapmap]
rs1953615	0.86[ASN][1000 genomes]
rs1999787	0.89[CEU][hapmap];0.80[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2785575	0.94[CHD][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2860121	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2880587	0.86[JPT][hapmap]
rs3798969	0.82[JPT][hapmap]
rs3798974	0.86[JPT][hapmap]
rs3798979	0.81[JPT][hapmap]
rs3798991	0.86[JPT][hapmap]
rs3798992	0.86[JPT][hapmap]
rs3798993	0.86[JPT][hapmap]
rs3798999	0.86[LWK][hapmap]
rs3823064	0.86[JPT][hapmap]
rs618714	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs6899467	0.86[JPT][hapmap]
rs7757025	0.86[CEU][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9454661	0.86[JPT][hapmap]
rs9454674	0.84[LWK][hapmap]
rs945528	0.86[JPT][hapmap]
rs945529	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
3	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
4	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
5	chr6:69700800-69710200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
10	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69703800-69719400	Weak transcription	Fetal Brain Female	brain
14	chr6:69704800-69708200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:69704800-69708400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:69704800-69713000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:69704800-69721600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:69705400-69706800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:69705400-69711600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:69706200-69706400	Strong transcription	Fetal Lung	lung
21	chr6:69706200-69706600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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