Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1006997	0.86[JPT][hapmap]
rs1336641	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1336645	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1336647	1.00[JPT][hapmap]
rs1336648	0.87[JPT][hapmap]
rs1336650	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1415030	0.82[JPT][hapmap]
rs1556754	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1556755	0.91[ASN][1000 genomes]
rs1932774	0.95[JPT][hapmap]
rs1953613	0.84[CEU][hapmap]
rs1999787	0.82[JPT][hapmap]
rs2860121	0.83[JPT][hapmap]
rs2880587	0.95[JPT][hapmap]
rs2880588	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3798974	0.95[JPT][hapmap]
rs3798979	0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3798983	0.83[JPT][hapmap]
rs3798991	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3798992	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3798993	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3823064	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6899467	0.96[JPT][hapmap]
rs9354812	0.82[JPT][hapmap]
rs9446079	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9454661	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs945528	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69652800-69672800	Weak transcription	Fetal Brain Male	brain
7	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:69666800-69672800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69667600-69672200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69668000-69675000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain

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