Variant report

Variant	rs1556754
Chromosome Location	chr6:69676937-69676938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69671912..69674615-chr6:69676195..69678865,4	K562	blood:
2	chr6:69676667..69679065-chr6:69686722..69689222,2	K562	blood:
3	chr6:69676667..69679537-chr6:69686722..69688400,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006997	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1336641	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1336645	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1336646	0.86[ASN][1000 genomes]
rs1336647	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1336648	0.91[JPT][hapmap]
rs1336649	0.88[ASN][1000 genomes]
rs1336650	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs1415030	0.86[JPT][hapmap]
rs1556755	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1932774	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1999787	0.86[JPT][hapmap]
rs1999788	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2860121	0.87[JPT][hapmap]
rs2880587	1.00[JPT][hapmap]
rs2880588	0.83[ASN][1000 genomes]
rs3798969	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3798974	1.00[JPT][hapmap]
rs3798979	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3798983	0.83[JPT][hapmap]
rs3798988	0.86[ASN][1000 genomes]
rs3798991	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs3798992	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3798993	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3823064	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6899467	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs7757025	0.83[JPT][hapmap]
rs9354812	0.86[JPT][hapmap]
rs9446079	0.83[ASN][1000 genomes]
rs9454661	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs945528	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
10	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69674000-69677800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:69676400-69677600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69676800-69678200	Flanking Active TSS	K562	blood
15	chr6:69676800-69678400	Enhancers	Primary hematopoietic stem cells	blood

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