Variant report

Variant	rs1932774
Chromosome Location	chr6:69682368-69682369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1006997	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1336641	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336645	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336648	0.88[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1336649	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336650	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1415030	0.84[JPT][hapmap]
rs1556754	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1556755	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1953615	0.86[ASN][1000 genomes]
rs1999787	0.84[JPT][hapmap]
rs1999788	0.96[ASN][1000 genomes]
rs2860121	0.85[JPT][hapmap]
rs2880587	1.00[JPT][hapmap]
rs2880588	0.91[ASN][1000 genomes]
rs3798969	0.95[JPT][hapmap]
rs3798974	1.00[JPT][hapmap]
rs3798979	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3798983	0.80[JPT][hapmap]
rs3798988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798991	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798992	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798993	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823064	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6899467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757025	0.88[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs9354812	0.84[JPT][hapmap]
rs9446079	0.91[ASN][1000 genomes]
rs9454661	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs945528	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs945529	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69681000-69684200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69681600-69682800	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links