Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1006997	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1283903	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336641	0.86[ASN][1000 genomes]
rs1336645	0.86[ASN][1000 genomes]
rs1336646	0.86[ASN][1000 genomes]
rs1336647	0.85[ASN][1000 genomes]
rs1336648	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336649	0.86[ASN][1000 genomes]
rs1415030	0.87[ASN][1000 genomes]
rs1415035	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1932774	0.86[ASN][1000 genomes]
rs1953615	0.97[ASN][1000 genomes]
rs1999787	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1999788	0.84[ASN][1000 genomes]
rs2785575	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2860121	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3798988	0.86[ASN][1000 genomes]
rs3798991	0.86[ASN][1000 genomes]
rs3798992	0.85[ASN][1000 genomes]
rs3798993	0.86[ASN][1000 genomes]
rs6899467	0.86[ASN][1000 genomes]
rs7757025	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9354812	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
4	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
5	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
6	chr6:69695200-69704400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69696200-69703400	Weak transcription	Fetal Brain Female	brain
8	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
9	chr6:69700000-69702400	Enhancers	Brain Angular Gyrus	brain
10	chr6:69700800-69710200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:69701000-69702000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:69701000-69703800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69701000-69706200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:69701200-69702000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain

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