Variant report

Variant	rs2785575
Chromosome Location	chr6:69725582-69725583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1006997	0.89[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1283903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1336648	0.91[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1415030	0.89[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1415035	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999787	0.89[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2860121	0.91[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs590369	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs602822	0.82[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs618714	1.00[ASW][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs7757025	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9354812	0.94[CHD][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs945529	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69718600-69726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:69719400-69725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:69721400-69728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:69721400-69728800	Weak transcription	Left Ventricle	heart
10	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
11	chr6:69722400-69725800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:69723000-69725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:69723000-69725600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:69723000-69726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:69725000-69726400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:69725400-69727200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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