Variant report

Variant	rs2888433
Chromosome Location	chr14:85716792-85716793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:85716141..85718309-chr14:85719086..85721853,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12050312	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435574	0.82[AMR][1000 genomes]
rs1530325	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1667505	0.82[CHB][hapmap]
rs1767418	1.00[CHB][hapmap]
rs17796669	0.96[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1867082	0.85[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs2029135	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2053514	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2372881	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34662815	0.90[EUR][1000 genomes]
rs4904242	0.88[EUR][1000 genomes]
rs7151509	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7160419	0.85[JPT][hapmap]
rs895909	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85709400-85718200	Weak transcription	HSMMtube	muscle
2	chr14:85714600-85716800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:85714800-85717000	Enhancers	NHEK	skin
4	chr14:85715000-85717400	Enhancers	HMEC	breast
5	chr14:85715000-85717800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:85715200-85717400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:85715200-85719000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:85715400-85717400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr14:85715400-85717600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:85715400-85717800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:85715600-85716800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:85715600-85717000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:85715600-85717200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr14:85715800-85716800	Weak transcription	Fetal Heart	heart
15	chr14:85716000-85718000	Weak transcription	Osteobl	bone
16	chr14:85716000-85718200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:85716000-85718400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:85716000-85718400	Weak transcription	Hela-S3	cervix
19	chr14:85716200-85716800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:85716200-85718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:85716400-85717200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:85716400-85717400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr14:85716600-85717000	Enhancers	Fetal Intestine Small	intestine
24	chr14:85716600-85717000	Enhancers	Ovary	ovary
25	chr14:85716600-85717200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:85716600-85717200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr14:85716600-85717200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:85716600-85717200	Enhancers	Fetal Intestine Large	intestine
29	chr14:85716600-85717200	Enhancers	Fetal Muscle Leg	muscle
30	chr14:85716600-85717400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:85716600-85717800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:85716600-85719000	Enhancers	HUVEC	blood vessel

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