Variant report

Variant	rs895909
Chromosome Location	chr14:85717664-85717665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12050312	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530325	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1767418	0.88[CHB][hapmap]
rs17796669	1.00[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs1867082	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2029135	0.92[EUR][1000 genomes]
rs2053514	0.92[EUR][1000 genomes]
rs2372881	0.95[EUR][1000 genomes]
rs2888433	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34662815	0.91[EUR][1000 genomes]
rs4904242	0.90[EUR][1000 genomes]
rs7151509	0.92[EUR][1000 genomes]
rs7160419	0.82[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85709400-85718200	Weak transcription	HSMMtube	muscle
2	chr14:85715000-85717800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:85715200-85719000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:85715400-85717800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:85716000-85718000	Weak transcription	Osteobl	bone
6	chr14:85716000-85718200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:85716000-85718400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:85716000-85718400	Weak transcription	Hela-S3	cervix
9	chr14:85716200-85718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:85716600-85717800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:85716600-85719000	Enhancers	HUVEC	blood vessel
12	chr14:85716800-85717800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr14:85716800-85718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:85717000-85718000	Weak transcription	NHEK	skin
15	chr14:85717200-85727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:85717400-85717800	Weak transcription	HMEC	breast
17	chr14:85717400-85723400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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