Variant report

Variant	rs290004
Chromosome Location	chr4:129158441-129158442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11098953	0.91[ASN][1000 genomes]
rs11098954	0.91[ASN][1000 genomes]
rs11728141	0.83[ASN][1000 genomes]
rs12650034	0.83[ASN][1000 genomes]
rs13103317	0.82[ASN][1000 genomes]
rs1829726	0.82[ASN][1000 genomes]
rs1851399	0.83[ASN][1000 genomes]
rs2036687	0.83[ASN][1000 genomes]
rs2101808	0.83[ASN][1000 genomes]
rs2202805	0.81[ASN][1000 genomes]
rs2391257	0.83[ASN][1000 genomes]
rs28609279	0.92[ASN][1000 genomes]
rs34837036	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3755896	0.83[ASN][1000 genomes]
rs4016	0.83[ASN][1000 genomes]
rs430431	0.83[ASN][1000 genomes]
rs4975180	0.83[ASN][1000 genomes]
rs4975299	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62318161	0.82[ASN][1000 genomes]
rs6814132	0.82[ASN][1000 genomes]
rs6816625	0.92[ASN][1000 genomes]
rs6842987	0.83[ASN][1000 genomes]
rs6849992	0.92[ASN][1000 genomes]
rs7666566	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129149800-129161800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129151000-129161600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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