Variant report

Variant	rs4975299
Chromosome Location	chr4:129159975-129159976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129157638..129160508-chr4:129163340..129166117,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10002814	0.81[EUR][1000 genomes]
rs11098953	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098954	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11728141	0.87[ASN][1000 genomes]
rs12510308	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs12511648	0.88[EUR][1000 genomes]
rs12650034	0.87[ASN][1000 genomes]
rs13103317	0.86[ASN][1000 genomes]
rs1391980	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1829726	0.86[ASN][1000 genomes]
rs1851399	0.87[ASN][1000 genomes]
rs1948506	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs2036687	0.87[ASN][1000 genomes]
rs2101808	0.86[ASN][1000 genomes]
rs2140107	0.88[EUR][1000 genomes]
rs2202805	0.85[ASN][1000 genomes]
rs2391257	0.87[ASN][1000 genomes]
rs28609279	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs290004	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34837036	0.94[ASN][1000 genomes]
rs3755896	0.87[ASN][1000 genomes]
rs4016	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs430431	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4975180	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4975300	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62318161	0.86[ASN][1000 genomes]
rs6534674	0.89[EUR][1000 genomes]
rs6534675	0.88[EUR][1000 genomes]
rs6814132	0.86[ASN][1000 genomes]
rs6816625	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6842987	0.87[ASN][1000 genomes]
rs6849992	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666566	0.87[ASN][1000 genomes]
rs7688852	0.89[EUR][1000 genomes]
rs9790593	0.95[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129149800-129161800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129151000-129161600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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