Variant report

Variant	rs2957602
Chromosome Location	chr8:51256566-51256567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51252100..51253925-chr8:51256216..51258662,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10086203	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10087774	0.86[ASN][1000 genomes]
rs10087960	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10093114	0.86[ASN][1000 genomes]
rs10095465	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10095599	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10095759	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10095977	0.86[ASN][1000 genomes]
rs10102970	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10282858	0.86[ASN][1000 genomes]
rs10283045	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10283105	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10283106	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10283221	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10504104	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10504105	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11773993	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11984985	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11985591	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11988564	0.86[ASN][1000 genomes]
rs11988748	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11989227	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11989642	0.86[ASN][1000 genomes]
rs11991913	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11993064	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11996185	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11996262	0.86[ASN][1000 genomes]
rs11997100	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11997543	0.86[ASN][1000 genomes]
rs11997557	0.86[ASN][1000 genomes]
rs11998275	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16914723	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16914738	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16914745	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16914775	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17698658	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17699001	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17699210	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17699383	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17772011	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17772076	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17778411	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28378585	0.86[ASN][1000 genomes]
rs28417739	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28446113	0.86[ASN][1000 genomes]
rs28480358	0.86[ASN][1000 genomes]
rs28546889	0.86[ASN][1000 genomes]
rs28597814	0.86[ASN][1000 genomes]
rs28616251	0.86[ASN][1000 genomes]
rs28640202	0.86[ASN][1000 genomes]
rs28681508	0.86[ASN][1000 genomes]
rs28691575	0.86[ASN][1000 genomes]
rs28736414	0.86[ASN][1000 genomes]
rs28813492	0.86[ASN][1000 genomes]
rs28845183	0.86[ASN][1000 genomes]
rs2923058	0.94[CEU][hapmap];1.00[EUR][1000 genomes]
rs58720841	0.86[ASN][1000 genomes]
rs59508370	0.86[ASN][1000 genomes]
rs61620844	0.86[ASN][1000 genomes]
rs7012956	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7357386	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7357569	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9298312	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522554	chr8:51256438-51256566	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv526909	chr8:51256438-51256566	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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