Variant report

Variant	rs296418
Chromosome Location	chr6:133656063-133656064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1015726	0.84[AFR][1000 genomes]
rs10485232	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753937	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759873	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523816	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524730	0.86[AFR][1000 genomes]
rs12525252	0.81[AFR][1000 genomes]
rs12527527	0.87[AFR][1000 genomes]
rs1336521	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336524	0.80[AFR][1000 genomes]
rs1336525	0.82[AFR][1000 genomes]
rs1336526	0.83[AFR][1000 genomes]
rs17062339	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301872	0.80[AFR][1000 genomes]
rs17301914	0.80[AFR][1000 genomes]
rs17302199	0.83[AFR][1000 genomes]
rs17302366	0.81[AFR][1000 genomes]
rs1814195	0.82[AFR][1000 genomes]
rs1962598	0.82[AFR][1000 genomes]
rs2785238	0.85[AFR][1000 genomes]
rs296414	0.84[AFR][1000 genomes]
rs296416	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296417	0.89[AFR][1000 genomes]
rs296421	0.84[ASN][1000 genomes]
rs369425	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373884	0.89[AFR][1000 genomes]
rs439123	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62428661	0.84[AFR][1000 genomes]
rs62428662	0.84[AFR][1000 genomes]
rs72991933	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72991942	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72993929	0.83[AFR][1000 genomes]
rs7454561	0.80[AFR][1000 genomes]
rs949767	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133655600-133658200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133655800-133657400	Weak transcription	Hela-S3	cervix

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