Variant report

Variant	rs296421
Chromosome Location	chr6:133670193-133670194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10485232	0.84[ASN][1000 genomes]
rs11753937	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11759873	0.84[ASN][1000 genomes]
rs12523816	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336521	0.84[ASN][1000 genomes]
rs17062339	0.84[ASN][1000 genomes]
rs296416	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296418	0.84[ASN][1000 genomes]
rs369425	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs377962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72991933	0.85[EUR][1000 genomes]
rs949767	0.81[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133664600-133672400	Weak transcription	Hela-S3	cervix
3	chr6:133665000-133672600	Weak transcription	A549	lung
4	chr6:133668000-133679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133669000-133678600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133669800-133671600	Enhancers	Dnd41	blood
7	chr6:133670000-133670200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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