Variant report

Variant	rs377962
Chromosome Location	chr6:133666904-133666905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485232	0.84[JPT][hapmap]
rs11753937	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759873	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs12523816	0.96[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs1336521	0.84[JPT][hapmap]
rs17062339	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs211589	0.82[MKK][hapmap]
rs211591	0.85[LWK][hapmap];0.82[MKK][hapmap]
rs211593	0.85[LWK][hapmap];0.82[MKK][hapmap]
rs212787	0.85[LWK][hapmap];0.82[MKK][hapmap]
rs296416	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs296421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs369425	0.85[EUR][1000 genomes]
rs402020	0.86[GIH][hapmap];0.81[MEX][hapmap]
rs572004	0.81[MEX][hapmap]
rs72991933	0.84[EUR][1000 genomes]
rs949767	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981083	chr6:133664882-133667356	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs377962	TAAR2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
3	chr6:133663200-133667400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:133664600-133672400	Weak transcription	Hela-S3	cervix
5	chr6:133665000-133672600	Weak transcription	A549	lung
6	chr6:133665400-133667800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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