The 2.0 version of rSNPBase

Variant report

Variant rs2997380
Chromosome Location chr1:95189230-95189231
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95152800-95195000 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr1:95168200-95200400 Weak transcription Pancreas Pancrea
3 chr1:95169400-95200400 Weak transcription Colonic Mucosa Colon
4 chr1:95173400-95200600 Weak transcription Right Atrium heart
5 chr1:95175800-95192600 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr1:95175800-95193000 Weak transcription Fetal Stomach stomach
7 chr1:95179600-95193800 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:95180200-95189600 Weak transcription NHDF-Ad bronchial
9 chr1:95181400-95189400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:95182600-95191000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:95184400-95190000 Enhancers Primary hematopoietic stem cells short term culture blood
12 chr1:95184400-95190800 Enhancers Primary monocytes fromperipheralblood blood
13 chr1:95185000-95190400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:95185400-95190000 Enhancers Primary hematopoietic stem cells blood
15 chr1:95186200-95211400 Weak transcription Gastric stomach
16 chr1:95187000-95193800 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:95187400-95190000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr1:95187400-95191800 Enhancers Primary neutrophils fromperipheralblood blood
19 chr1:95188000-95189400 Weak transcription Fetal Thymus thymus
20 chr1:95188000-95190600 Enhancers Monocytes-CD14+_RO01746 blood
21 chr1:95188800-95189400 Genic enhancers Fetal Intestine Small intestine
22 chr1:95188800-95189800 Enhancers Spleen Spleen
23 chr1:95188800-95190600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:95189000-95189600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:95189000-95189800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:95189000-95190000 Enhancers Primary B cells from cord blood blood
27 chr1:95189000-95190200 Enhancers Placenta Amnion Placenta Amnion
28 chr1:95189000-95190600 Enhancers Fetal Intestine Large intestine
29 chr1:95189200-95189400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:95189200-95189400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
31 chr1:95189200-95189600 Enhancers Fetal Muscle Trunk muscle
32 chr1:95189200-95189600 Enhancers Left Ventricle heart
33 chr1:95189200-95189800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr1:95189200-95189800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:95189200-95189800 Enhancers Lung lung
36 chr1:95189200-95190000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:95189200-95190000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:95189200-95190000 Enhancers HepG2 liver

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Last update: Aug 31, 2015