Variant report
| Variant | rs3013561 |
|---|---|
| Chromosome Location | chr13:67842510-67842511 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr13:67842498-67842565 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPSAP53 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs12323131 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs3812858 | 0.95[EUR][1000 genomes] |
| rs56400607 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74093493 | 1.00[EUR][1000 genomes] |
| rs74095115 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9592505 | 0.95[EUR][1000 genomes] |
| rs9599208 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035741 | chr13:67212973-68077950 | Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv541817 | chr13:67212973-68077950 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv562140 | chr13:67820503-67858550 | Weak transcription Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv977255 | chr13:67840995-67844722 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
