Variant report

Variant	rs3812858
Chromosome Location	chr13:67808154-67808155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12323131	0.91[EUR][1000 genomes]
rs3013561	0.95[EUR][1000 genomes]
rs56400607	0.95[EUR][1000 genomes]
rs60699671	1.00[ASN][1000 genomes]
rs73511412	1.00[ASN][1000 genomes]
rs73511438	1.00[ASN][1000 genomes]
rs73511443	1.00[ASN][1000 genomes]
rs73511445	1.00[ASN][1000 genomes]
rs73511447	1.00[ASN][1000 genomes]
rs74093482	1.00[ASN][1000 genomes]
rs74093493	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74095115	0.95[EUR][1000 genomes]
rs9317648	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9317649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9592505	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9599198	1.00[ASN][1000 genomes]
rs9599199	0.83[ASN][1000 genomes]
rs9599208	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67801200-67810000	Active TSS	Right Atrium	heart
2	chr13:67801600-67808400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr13:67802400-67809400	Active TSS	A549	lung
4	chr13:67804400-67811400	Active TSS	Stomach Smooth Muscle	stomach
5	chr13:67805600-67810400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:67805800-67811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:67806000-67809400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:67807200-67809400	Weak transcription	Adipose Nuclei	Adipose
9	chr13:67807200-67810800	Weak transcription	Brain Substantia Nigra	brain
10	chr13:67807400-67809600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:67807400-67810200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:67807600-67811000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:67807800-67809400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:67808000-67808400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr13:67808000-67808600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:67808000-67808800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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