Variant report

Variant	rs9599198
Chromosome Location	chr13:67778088-67778089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3812858	1.00[ASN][1000 genomes]
rs60699671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511412	1.00[ASN][1000 genomes]
rs73511438	1.00[ASN][1000 genomes]
rs73511443	1.00[ASN][1000 genomes]
rs73511445	1.00[ASN][1000 genomes]
rs73511447	1.00[ASN][1000 genomes]
rs74093470	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs74093482	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317648	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317649	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592505	1.00[ASN][1000 genomes]
rs9599199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9652228	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67750600-67780800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
4	chr13:67767000-67783000	Weak transcription	HSMM	muscle
5	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
6	chr13:67775000-67778200	Weak transcription	Brain Angular Gyrus	brain
7	chr13:67775000-67778400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:67775000-67778600	Weak transcription	Brain Anterior Caudate	brain
9	chr13:67775000-67783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:67777000-67778400	Weak transcription	Brain Substantia Nigra	brain
11	chr13:67777200-67778400	Enhancers	A549	lung
12	chr13:67777600-67779800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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