Variant report

Variant	rs9652228
Chromosome Location	chr13:67796259-67796260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10161765	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592228	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031863	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60699671	0.80[AMR][1000 genomes]
rs74093462	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093468	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9317647	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9592502	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599196	1.00[EUR][1000 genomes]
rs9599198	0.80[AMR][1000 genomes]
rs9599199	0.80[AMR][1000 genomes]
rs9599200	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
2	chr13:67792200-67797200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:67794600-67800000	Active TSS	Fetal Brain Female	brain
4	chr13:67795000-67798200	Enhancers	Dnd41	blood
5	chr13:67795200-67797000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
7	chr13:67795600-67796400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:67795800-67796400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:67795800-67796400	Active TSS	Right Ventricle	heart
10	chr13:67795800-67797000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:67795800-67797200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:67795800-67797200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:67795800-67798200	Enhancers	Fetal Heart	heart
14	chr13:67795800-67798200	Enhancers	Fetal Lung	lung
15	chr13:67795800-67798200	Enhancers	HSMM	muscle
16	chr13:67795800-67799600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:67795800-67799800	Active TSS	Right Atrium	heart
18	chr13:67796000-67797400	Weak transcription	NH-A	brain
19	chr13:67796000-67798200	Weak transcription	Primary T cells from cord blood	blood
20	chr13:67796000-67798600	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:67796000-67799600	Active TSS	Brain Hippocampus Middle	brain
22	chr13:67796000-67799600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr13:67796000-67799600	Active TSS	Stomach Smooth Muscle	stomach
24	chr13:67796200-67796400	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr13:67796200-67796400	Enhancers	HSMMtube	muscle
26	chr13:67796200-67796600	Enhancers	Primary B cells from cord blood	blood
27	chr13:67796200-67796600	Active TSS	Muscle Satellite Cultured Cells	--
28	chr13:67796200-67797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:67796200-67797000	Weak transcription	Adipose Nuclei	Adipose
30	chr13:67796200-67797000	Weak transcription	Osteobl	bone
31	chr13:67796200-67797200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr13:67796200-67797200	Weak transcription	Fetal Brain Male	brain
33	chr13:67796200-67797200	Weak transcription	NHDF-Ad	bronchial
34	chr13:67796200-67798000	Weak transcription	Liver	Liver
35	chr13:67796200-67798200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:67796200-67798200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr13:67796200-67798200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr13:67796200-67798200	Weak transcription	Fetal Muscle Leg	muscle
39	chr13:67796200-67798200	Weak transcription	Fetal Stomach	stomach
40	chr13:67796200-67798200	Weak transcription	Left Ventricle	heart
41	chr13:67796200-67798200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr13:67796200-67798200	Weak transcription	Thymus	Thymus
43	chr13:67796200-67799400	Active TSS	Brain Anterior Caudate	brain
44	chr13:67796200-67799400	Active TSS	Brain Germinal Matrix	brain
45	chr13:67796200-67799600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:67796200-67799600	Weak transcription	Fetal Thymus	thymus
47	chr13:67796200-67799600	Active TSS	A549	lung
48	chr13:67796200-67801800	Weak transcription	Psoas Muscle	Psoas
49	chr13:67796200-67803000	Weak transcription	Gastric	stomach
50	chr13:67796200-67806000	Active TSS	Brain Inferior Temporal Lobe	brain

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