Variant report

Variant	rs74093468
Chromosome Location	chr13:67778979-67778980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10161765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093470	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093493	0.88[AFR][1000 genomes]
rs9317647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9592502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599196	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652228	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67750600-67780800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
4	chr13:67767000-67783000	Weak transcription	HSMM	muscle
5	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
6	chr13:67775000-67783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:67777600-67779800	Enhancers	Brain Hippocampus Middle	brain
8	chr13:67778200-67779400	Enhancers	Brain Angular Gyrus	brain
9	chr13:67778400-67779400	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:67778400-67779400	Enhancers	Brain Substantia Nigra	brain
11	chr13:67778600-67779200	Enhancers	Brain Anterior Caudate	brain
12	chr13:67778600-67779400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:67778600-67779600	Enhancers	Dnd41	blood
14	chr13:67778600-67780200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:67778800-67779200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:67778800-67779400	Active TSS	A549	lung
17	chr13:67778800-67779600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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